Pseudidiomarina taiwanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Pseudidiomarina

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2021 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432ZL29|A0A432ZL29_9GAMM Rhomboid family intramembrane serine protease OS=Pseudidiomarina taiwanensis OX=337250 GN=CWI83_06420 PE=4 SV=1
MM1 pKa = 7.37KK2 pKa = 10.78GIMKK6 pKa = 10.48YY7 pKa = 10.86GLATVAAVLLSACGSSSDD25 pKa = 4.55DD26 pKa = 3.32EE27 pKa = 4.77STVVLPEE34 pKa = 5.26LITEE38 pKa = 4.28VRR40 pKa = 11.84VHH42 pKa = 5.8HH43 pKa = 6.15TVADD47 pKa = 3.94APNVNVLVNGGAAVEE62 pKa = 4.14DD63 pKa = 4.0AGFGASSTVLEE74 pKa = 4.89LDD76 pKa = 3.13AGTYY80 pKa = 9.93SLQVDD85 pKa = 5.08AILADD90 pKa = 3.92GSTATVIGPVNDD102 pKa = 3.43TLAANTRR109 pKa = 11.84YY110 pKa = 10.09EE111 pKa = 3.68ILAIGKK117 pKa = 9.01VADD120 pKa = 3.86EE121 pKa = 4.79TIQPLIITNLNSEE134 pKa = 4.22IADD137 pKa = 3.53GNARR141 pKa = 11.84LQVVHH146 pKa = 7.12AAPDD150 pKa = 3.47APLVDD155 pKa = 4.55IYY157 pKa = 10.72LTAPDD162 pKa = 4.75ADD164 pKa = 4.44LSASSPAATLAFSDD178 pKa = 3.56FTGQVEE184 pKa = 4.82VPAGDD189 pKa = 3.56YY190 pKa = 9.08QVRR193 pKa = 11.84ITPAGDD199 pKa = 3.2PATVVFDD206 pKa = 4.33SGTLPLTAGADD217 pKa = 4.09LIVSAVTNTKK227 pKa = 10.68AGDD230 pKa = 4.09SPVMLQVADD239 pKa = 4.09GSGASIVTDD248 pKa = 3.73INAGADD254 pKa = 3.36VRR256 pKa = 11.84IVHH259 pKa = 6.51SSADD263 pKa = 3.55APTVDD268 pKa = 5.59FVADD272 pKa = 3.3GDD274 pKa = 4.24MPATLATLSFGQFTDD289 pKa = 3.71YY290 pKa = 11.54LNVADD295 pKa = 5.45GDD297 pKa = 4.1YY298 pKa = 11.1LIDD301 pKa = 4.11VIVNGTTTVALNDD314 pKa = 3.64IPLSLAQGEE323 pKa = 4.63IYY325 pKa = 10.33SVYY328 pKa = 10.69AIGSAGDD335 pKa = 3.68GSLTAGVLTPDD346 pKa = 3.26TRR348 pKa = 11.84RR349 pKa = 11.84IATEE353 pKa = 3.67AKK355 pKa = 9.37LQAVHH360 pKa = 7.15ASPTAGDD367 pKa = 3.11VDD369 pKa = 3.89IYY371 pKa = 10.55VTATDD376 pKa = 5.67DD377 pKa = 3.47ITSATPAFTAVPFTTEE393 pKa = 4.08NGPASTGYY401 pKa = 10.26VSLMPGDD408 pKa = 4.28YY409 pKa = 10.49YY410 pKa = 10.86VTITPTGTKK419 pKa = 9.83DD420 pKa = 3.13AAIGPEE426 pKa = 4.21LVTLEE431 pKa = 4.14GNGIYY436 pKa = 9.51TAVAVDD442 pKa = 3.61AVGGGVPLNVIAMDD456 pKa = 4.59DD457 pKa = 3.9FATVDD462 pKa = 3.14

Molecular weight: 46.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432ZEQ9|A0A432ZEQ9_9GAMM DUF2489 domain-containing protein OS=Pseudidiomarina taiwanensis OX=337250 GN=CWI83_08455 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.94GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2021

0

2021

682925

37

1759

337.9

37.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.358 ± 0.061

0.858 ± 0.016

5.393 ± 0.046

6.354 ± 0.051

3.877 ± 0.035

6.978 ± 0.051

2.273 ± 0.027

5.665 ± 0.041

3.904 ± 0.041

10.837 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.365 ± 0.027

3.369 ± 0.032

4.292 ± 0.034

5.578 ± 0.06

5.669 ± 0.041

5.637 ± 0.036

5.121 ± 0.03

7.144 ± 0.045

1.367 ± 0.028

2.962 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski