Ancrocorticia populi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Ancrocorticia

Average proteome isoelectric point is 5.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2288 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V1K690|A0A2V1K690_9ACTO HTH luxR-type domain-containing protein OS=Ancrocorticia populi OX=2175228 GN=DD236_08590 PE=4 SV=1
MM1 pKa = 7.56RR2 pKa = 11.84QNKK5 pKa = 9.87YY6 pKa = 10.32GVPAMAAAAALMLSACSSSGDD27 pKa = 3.92DD28 pKa = 3.82EE29 pKa = 5.84SSGGDD34 pKa = 3.18GGSGDD39 pKa = 4.18KK40 pKa = 10.14LTVGIKK46 pKa = 10.01FDD48 pKa = 3.76QPGLGLQKK56 pKa = 10.52GSEE59 pKa = 4.17YY60 pKa = 10.94SGFDD64 pKa = 2.96VDD66 pKa = 3.54VAYY69 pKa = 10.75YY70 pKa = 10.51VADD73 pKa = 3.62KK74 pKa = 11.01LGYY77 pKa = 10.05SQDD80 pKa = 3.19QVEE83 pKa = 4.93FVQSVTAQRR92 pKa = 11.84EE93 pKa = 4.28TMLEE97 pKa = 3.79NGQADD102 pKa = 4.55MIVATYY108 pKa = 10.02TMSDD112 pKa = 3.12ARR114 pKa = 11.84KK115 pKa = 8.58EE116 pKa = 4.21QIDD119 pKa = 3.55FAGPYY124 pKa = 9.62LVAGQSLLVAADD136 pKa = 4.32DD137 pKa = 4.37NSISGPDD144 pKa = 3.43NLDD147 pKa = 3.29GKK149 pKa = 10.03KK150 pKa = 10.08LCSVSGAVPAQRR162 pKa = 11.84IKK164 pKa = 11.16DD165 pKa = 3.73EE166 pKa = 4.27YY167 pKa = 11.33ASDD170 pKa = 3.72VQLYY174 pKa = 7.62EE175 pKa = 3.68ASTYY179 pKa = 9.48SEE181 pKa = 4.23CVEE184 pKa = 4.0LLGNGTIDD192 pKa = 4.97AVTTDD197 pKa = 3.76DD198 pKa = 5.67SILAGYY204 pKa = 9.43AAVPEE209 pKa = 4.04YY210 pKa = 10.56DD211 pKa = 3.6GKK213 pKa = 11.14FKK215 pKa = 11.12LVGEE219 pKa = 4.56AFSEE223 pKa = 4.42EE224 pKa = 4.66PYY226 pKa = 11.11GVGFPKK232 pKa = 10.71GSDD235 pKa = 2.83KK236 pKa = 11.36CEE238 pKa = 3.99PANEE242 pKa = 4.49ALTEE246 pKa = 4.2MIDD249 pKa = 4.35DD250 pKa = 4.64GSWDD254 pKa = 3.95QFLQDD259 pKa = 4.37NLGDD263 pKa = 4.22AYY265 pKa = 10.11TPDD268 pKa = 3.7ASLNPPEE275 pKa = 4.66VGGACSS281 pKa = 3.11

Molecular weight: 29.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V1K631|A0A2V1K631_9ACTO GntR family transcriptional regulator OS=Ancrocorticia populi OX=2175228 GN=DD236_11495 PE=4 SV=1
MM1 pKa = 7.41VKK3 pKa = 9.03RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.4VHH17 pKa = 5.57GFRR20 pKa = 11.84KK21 pKa = 10.13RR22 pKa = 11.84MGTRR26 pKa = 11.84AGRR29 pKa = 11.84AVLANRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.43GRR40 pKa = 11.84HH41 pKa = 4.95SLSAA45 pKa = 3.67

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2288

0

2288

792421

29

2979

346.3

37.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.32 ± 0.055

0.752 ± 0.014

6.043 ± 0.047

6.531 ± 0.047

3.214 ± 0.031

8.697 ± 0.049

1.981 ± 0.022

5.301 ± 0.039

2.958 ± 0.034

9.613 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.286 ± 0.022

2.76 ± 0.029

4.913 ± 0.035

3.303 ± 0.033

6.069 ± 0.056

6.401 ± 0.036

5.946 ± 0.044

8.149 ± 0.045

1.415 ± 0.021

2.346 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski