Leptonychotes weddellii papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2I8B2P1|A0A2I8B2P1_9PAPI Major capsid protein L1 OS=Leptonychotes weddellii papillomavirus 1 OX=2077302 GN=L1 PE=3 SV=1
MM1 pKa = 7.55HH2 pKa = 7.4GEE4 pKa = 3.99KK5 pKa = 9.71ATLRR9 pKa = 11.84DD10 pKa = 3.51IVLEE14 pKa = 4.12EE15 pKa = 4.07QPDD18 pKa = 3.88AVDD21 pKa = 3.94LVCYY25 pKa = 9.9EE26 pKa = 3.82QMPPQEE32 pKa = 4.34EE33 pKa = 4.3EE34 pKa = 4.12RR35 pKa = 11.84PGTVTYY41 pKa = 8.91PYY43 pKa = 10.43RR44 pKa = 11.84VATDD48 pKa = 3.33CGICKK53 pKa = 9.1RR54 pKa = 11.84TVRR57 pKa = 11.84CVCLAEE63 pKa = 4.3EE64 pKa = 4.1SDD66 pKa = 3.48VRR68 pKa = 11.84IFQEE72 pKa = 4.15LLCGTFCFVCQSCARR87 pKa = 11.84KK88 pKa = 8.55QHH90 pKa = 5.78FNYY93 pKa = 10.52GGG95 pKa = 3.11

Molecular weight: 10.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2I8B2N4|A0A2I8B2N4_9PAPI Protein E7 OS=Leptonychotes weddellii papillomavirus 1 OX=2077302 GN=E7 PE=3 SV=1
MM1 pKa = 7.61EE2 pKa = 5.38NLNKK6 pKa = 10.04ILDD9 pKa = 3.98SLQEE13 pKa = 4.12QILTLYY19 pKa = 10.31EE20 pKa = 4.18EE21 pKa = 4.62NSTNLTAHH29 pKa = 5.61IRR31 pKa = 11.84LWRR34 pKa = 11.84LMRR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 3.68QVFFYY44 pKa = 9.86WARR47 pKa = 11.84QQGVTRR53 pKa = 11.84VGMRR57 pKa = 11.84PLPSQASSQTKK68 pKa = 9.23AKK70 pKa = 10.12EE71 pKa = 4.07AIEE74 pKa = 3.84QEE76 pKa = 4.29IYY78 pKa = 9.32VTSLSQSRR86 pKa = 11.84YY87 pKa = 9.54GDD89 pKa = 3.78EE90 pKa = 4.03PWTIGQTSRR99 pKa = 11.84EE100 pKa = 3.97RR101 pKa = 11.84LLADD105 pKa = 3.45PQYY108 pKa = 10.84CFKK111 pKa = 10.92KK112 pKa = 10.62DD113 pKa = 3.51GVQLEE118 pKa = 4.15VRR120 pKa = 11.84FDD122 pKa = 3.72GDD124 pKa = 3.15KK125 pKa = 11.11EE126 pKa = 4.05NLVRR130 pKa = 11.84YY131 pKa = 6.77TFWQTIYY138 pKa = 10.55YY139 pKa = 8.98QDD141 pKa = 6.0AMDD144 pKa = 4.29EE145 pKa = 4.21WQKK148 pKa = 9.34TAGLVDD154 pKa = 3.61SCGLYY159 pKa = 10.5YY160 pKa = 10.71VDD162 pKa = 4.37AQGLKK167 pKa = 10.31LYY169 pKa = 10.67YY170 pKa = 10.37VDD172 pKa = 6.31FKK174 pKa = 11.83AEE176 pKa = 3.6AAKK179 pKa = 10.64YY180 pKa = 10.15SRR182 pKa = 11.84TGLYY186 pKa = 9.49EE187 pKa = 3.63VLGNYY192 pKa = 7.1VTTDD196 pKa = 2.89VSTSCSGVPHH206 pKa = 6.78TAASDD211 pKa = 3.68YY212 pKa = 11.31TDD214 pKa = 5.02AEE216 pKa = 4.33DD217 pKa = 3.92TAQQRR222 pKa = 11.84PPARR226 pKa = 11.84HH227 pKa = 6.83AITTPKK233 pKa = 8.56KK234 pKa = 9.02TSAAPPRR241 pKa = 11.84RR242 pKa = 11.84YY243 pKa = 9.08RR244 pKa = 11.84VRR246 pKa = 11.84RR247 pKa = 11.84SRR249 pKa = 11.84SRR251 pKa = 11.84SPRR254 pKa = 11.84FSSTPTRR261 pKa = 11.84PRR263 pKa = 11.84GGVRR267 pKa = 11.84GPRR270 pKa = 11.84QRR272 pKa = 11.84QRR274 pKa = 11.84EE275 pKa = 4.05PRR277 pKa = 11.84STSRR281 pKa = 11.84SAEE284 pKa = 3.71RR285 pKa = 11.84VAPPSAEE292 pKa = 3.9EE293 pKa = 3.64VGRR296 pKa = 11.84RR297 pKa = 11.84HH298 pKa = 4.79QTPSKK303 pKa = 10.22RR304 pKa = 11.84SGGRR308 pKa = 11.84IARR311 pKa = 11.84LIADD315 pKa = 3.66ARR317 pKa = 11.84DD318 pKa = 3.48PPVIIVKK325 pKa = 10.62GDD327 pKa = 3.47GNRR330 pKa = 11.84VKK332 pKa = 10.81CLRR335 pKa = 11.84FRR337 pKa = 11.84LKK339 pKa = 10.89SKK341 pKa = 10.61FPTFFDD347 pKa = 4.78KK348 pKa = 10.82ISTTWTWTSSDD359 pKa = 3.11TTDD362 pKa = 2.92RR363 pKa = 11.84VGSSRR368 pKa = 11.84MLISFTDD375 pKa = 3.36HH376 pKa = 5.14QQRR379 pKa = 11.84QVFLDD384 pKa = 3.87SVPLPSSVRR393 pKa = 11.84FALGSFDD400 pKa = 4.26SLL402 pKa = 4.03

Molecular weight: 45.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2356

95

600

392.7

44.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.9 ± 0.392

2.037 ± 0.672

5.9 ± 0.175

6.409 ± 0.404

5.008 ± 0.303

6.282 ± 0.72

1.995 ± 0.156

4.839 ± 0.478

5.178 ± 0.773

9.041 ± 0.65

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.528 ± 0.265

4.202 ± 0.922

6.494 ± 1.232

4.287 ± 0.541

6.706 ± 1.069

7.81 ± 0.815

5.56 ± 0.736

6.07 ± 0.452

1.316 ± 0.426

3.438 ± 0.254
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski