Testudinid alphaherpesvirus 3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Scutavirus

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 100 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K1R170|A0A0K1R170_9ALPH Envelope glycoprotein L OS=Testudinid alphaherpesvirus 3 OX=2560801 GN=ORF25 PE=4 SV=1
MM1 pKa = 7.69LLTFRR6 pKa = 11.84NPRR9 pKa = 11.84AIRR12 pKa = 11.84DD13 pKa = 3.55IVSIGMFLRR22 pKa = 11.84SVTICGLFLSGFVVCYY38 pKa = 8.67PAQTHH43 pKa = 5.71SPTYY47 pKa = 10.67GGTLPTDD54 pKa = 3.25VSDD57 pKa = 4.17GLRR60 pKa = 11.84STEE63 pKa = 3.76KK64 pKa = 10.07PRR66 pKa = 11.84PAEE69 pKa = 3.74EE70 pKa = 3.71QKK72 pKa = 10.91IIDD75 pKa = 4.23TLNQKK80 pKa = 9.94CVLQHH85 pKa = 6.75DD86 pKa = 4.46VEE88 pKa = 4.82FKK90 pKa = 10.42NCAIQVSFSDD100 pKa = 4.27PEE102 pKa = 3.93ITLALYY108 pKa = 10.52DD109 pKa = 4.38HH110 pKa = 7.12LALYY114 pKa = 7.08QQCVIQFTSFAEE126 pKa = 4.52GTTTCEE132 pKa = 3.61SWGPTPIPLDD142 pKa = 3.52LCLCDD147 pKa = 4.13EE148 pKa = 5.03GGLNKK153 pKa = 10.33CAVSGAKK160 pKa = 9.1TIHH163 pKa = 5.57VFYY166 pKa = 10.11PSGPAVSAAKK176 pKa = 9.63FQKK179 pKa = 10.49NQTLLITTDD188 pKa = 3.17DD189 pKa = 3.87CGRR192 pKa = 11.84TLSTASTASPISDD205 pKa = 3.81SEE207 pKa = 4.2KK208 pKa = 10.3HH209 pKa = 6.57RR210 pKa = 11.84SICFQLSPKK219 pKa = 9.71PEE221 pKa = 4.5NIGQHH226 pKa = 4.82ILRR229 pKa = 11.84VIRR232 pKa = 11.84QPLTAISRR240 pKa = 11.84QGPFSYY246 pKa = 11.14LNDD249 pKa = 3.34THH251 pKa = 6.82TLLLPGPVSQEE262 pKa = 3.52QHH264 pKa = 5.6DD265 pKa = 4.36TYY267 pKa = 11.26DD268 pKa = 3.42GSGEE272 pKa = 4.04MEE274 pKa = 4.6PNWFNYY280 pKa = 8.29TYY282 pKa = 10.94QDD284 pKa = 4.06DD285 pKa = 4.29LTLALYY291 pKa = 10.68SGDD294 pKa = 3.99LLDD297 pKa = 4.8VLGDD301 pKa = 3.52DD302 pKa = 3.54TVFFVFPDD310 pKa = 4.4SICVNYY316 pKa = 9.68TSHH319 pKa = 7.48PYY321 pKa = 10.3SEE323 pKa = 4.72TSAEE327 pKa = 4.13YY328 pKa = 10.73GDD330 pKa = 3.82SSEE333 pKa = 4.05ALEE336 pKa = 4.1YY337 pKa = 10.7TIGRR341 pKa = 11.84VDD343 pKa = 3.54ACTLTAIQTQINGTVIYY360 pKa = 9.81DD361 pKa = 3.62VPCEE365 pKa = 3.9EE366 pKa = 4.55GQTCFGYY373 pKa = 10.87VYY375 pKa = 10.6GDD377 pKa = 3.4RR378 pKa = 11.84MKK380 pKa = 10.59LTVAHH385 pKa = 6.93PGYY388 pKa = 6.98TTQEE392 pKa = 4.09HH393 pKa = 6.71NYY395 pKa = 9.31GNYY398 pKa = 9.6VEE400 pKa = 5.55LDD402 pKa = 3.89AYY404 pKa = 11.22DD405 pKa = 4.3MITPEE410 pKa = 4.52PGSPSKK416 pKa = 10.81HH417 pKa = 6.29IIWKK421 pKa = 5.75TTLFSDD427 pKa = 4.96LSDD430 pKa = 4.35DD431 pKa = 4.88FVDD434 pKa = 3.62TRR436 pKa = 11.84LNRR439 pKa = 11.84HH440 pKa = 5.45QLDD443 pKa = 4.23GVCDD447 pKa = 4.11DD448 pKa = 4.77EE449 pKa = 4.85GCPGEE454 pKa = 4.99GSWEE458 pKa = 4.24DD459 pKa = 3.33IYY461 pKa = 10.75PTVHH465 pKa = 6.33EE466 pKa = 4.45

Molecular weight: 51.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K1R159|A0A0K1R159_9ALPH ICP4-like protein OS=Testudinid alphaherpesvirus 3 OX=2560801 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.66EE2 pKa = 5.31SGGNGRR8 pKa = 11.84GRR10 pKa = 11.84PRR12 pKa = 11.84GRR14 pKa = 11.84PTRR17 pKa = 11.84RR18 pKa = 11.84SRR20 pKa = 11.84GRR22 pKa = 11.84RR23 pKa = 11.84GPSPPRR29 pKa = 11.84TRR31 pKa = 11.84SRR33 pKa = 11.84SPLRR37 pKa = 11.84HH38 pKa = 6.02GPDD41 pKa = 3.26SPEE44 pKa = 4.37PGPSGSGMVPRR55 pKa = 11.84LVRR58 pKa = 11.84PSPGDD63 pKa = 3.36PEE65 pKa = 4.16QAHH68 pKa = 6.86PGSPARR74 pKa = 11.84QQPRR78 pKa = 11.84DD79 pKa = 3.61NGGSSDD85 pKa = 3.8STVSLSNPEE94 pKa = 4.01SDD96 pKa = 3.33SGQITSSDD104 pKa = 3.75SGDD107 pKa = 3.69EE108 pKa = 3.9AHH110 pKa = 7.37SPGLVQGPVSPGPTPFPRR128 pKa = 11.84PGTLPVEE135 pKa = 4.49VGDD138 pKa = 4.07VSSSTSVQAPPTGNQGRR155 pKa = 11.84SPGEE159 pKa = 3.86VAPDD163 pKa = 3.79PPHH166 pKa = 6.11IPRR169 pKa = 11.84WVRR172 pKa = 11.84LAGQPNIGPMPPIARR187 pKa = 11.84DD188 pKa = 3.38QRR190 pKa = 11.84ISEE193 pKa = 4.34DD194 pKa = 4.26HH195 pKa = 6.92PPADD199 pKa = 3.77PGNYY203 pKa = 9.35VFIIYY208 pKa = 9.17TGG210 pKa = 3.16

Molecular weight: 21.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

100

0

100

42401

79

2574

424.0

48.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.021 ± 0.201

2.323 ± 0.166

5.46 ± 0.14

5.604 ± 0.154

4.328 ± 0.151

5.243 ± 0.176

2.535 ± 0.092

6.141 ± 0.17

4.627 ± 0.173

9.698 ± 0.185

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.571 ± 0.097

4.795 ± 0.136

5.354 ± 0.225

3.266 ± 0.116

5.887 ± 0.171

7.493 ± 0.176

6.762 ± 0.143

6.415 ± 0.129

1.149 ± 0.087

4.33 ± 0.148
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski