Arachidicoccus ginsenosidivorans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Arachidicoccus

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4066 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B8VIF2|A0A5B8VIF2_9BACT Ketoacyl_synth_N domain-containing protein OS=Arachidicoccus ginsenosidivorans OX=496057 GN=FSB73_05845 PE=4 SV=1
MM1 pKa = 7.82NIKK4 pKa = 9.29TNNNEE9 pKa = 3.67KK10 pKa = 10.29CDD12 pKa = 3.74YY13 pKa = 11.06ALQDD17 pKa = 4.37LYY19 pKa = 11.82NVIDD23 pKa = 4.29PEE25 pKa = 5.09IGLNIVDD32 pKa = 5.2LGLLYY37 pKa = 10.84EE38 pKa = 4.52MYY40 pKa = 10.63FDD42 pKa = 4.49EE43 pKa = 5.2DD44 pKa = 3.73AKK46 pKa = 11.17KK47 pKa = 10.69LEE49 pKa = 4.95CIMTLTTQFCPMGEE63 pKa = 4.67AITSDD68 pKa = 3.15THH70 pKa = 7.16NSLEE74 pKa = 4.35QSFPDD79 pKa = 3.04WDD81 pKa = 3.87IIINLIFEE89 pKa = 4.8PAWNMNMISMTGRR102 pKa = 11.84EE103 pKa = 4.13YY104 pKa = 11.02LGQQ107 pKa = 3.87

Molecular weight: 12.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B8VQG2|A0A5B8VQG2_9BACT Beta-N-acetylhexosaminidase OS=Arachidicoccus ginsenosidivorans OX=496057 GN=FSB73_17130 PE=3 SV=1
MM1 pKa = 7.72PKK3 pKa = 10.39VKK5 pKa = 9.87TNSSAKK11 pKa = 10.0KK12 pKa = 8.53RR13 pKa = 11.84FKK15 pKa = 10.2VTGTGEE21 pKa = 4.34LMHH24 pKa = 6.12QKK26 pKa = 9.8PFKK29 pKa = 10.53RR30 pKa = 11.84HH31 pKa = 5.21ILTKK35 pKa = 10.44KK36 pKa = 6.78STKK39 pKa = 9.63RR40 pKa = 11.84KK41 pKa = 7.77RR42 pKa = 11.84ALRR45 pKa = 11.84IMGTVAPSHH54 pKa = 5.56KK55 pKa = 10.29HH56 pKa = 3.49FVQRR60 pKa = 11.84LLRR63 pKa = 11.84LKK65 pKa = 10.65

Molecular weight: 7.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4066

0

4066

1369608

21

2099

336.8

37.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.519 ± 0.037

0.834 ± 0.012

5.499 ± 0.025

4.941 ± 0.039

4.649 ± 0.026

7.085 ± 0.039

2.065 ± 0.018

7.011 ± 0.031

6.951 ± 0.039

9.532 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.367 ± 0.016

5.456 ± 0.041

3.995 ± 0.025

4.319 ± 0.024

3.925 ± 0.02

6.592 ± 0.032

5.756 ± 0.027

5.801 ± 0.025

1.385 ± 0.017

4.318 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski