Soboliphyme baturini

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Dioctophymatida; Dioctophymatoidea; Soboliphymatidae; Soboliphyme

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13153 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A183J7P8|A0A183J7P8_9BILA Uncharacterized protein OS=Soboliphyme baturini OX=241478 GN=SBAD_LOCUS11896 PE=4 SV=1
MM1 pKa = 7.29VVDD4 pKa = 4.27GAIGGGDD11 pKa = 3.4SMHH14 pKa = 6.48SVWSSTTKK22 pKa = 10.99AEE24 pKa = 5.48DD25 pKa = 3.62IVPDD29 pKa = 4.32DD30 pKa = 5.6DD31 pKa = 5.8GFDD34 pKa = 4.52DD35 pKa = 3.69VWSCGGGGLYY45 pKa = 9.97PXXXXXXXXXXXXXAIGSCTPFSFGGSLMTDD76 pKa = 3.03THH78 pKa = 6.55DD79 pKa = 3.76LRR81 pKa = 11.84SPASCWEE88 pKa = 3.97DD89 pKa = 3.21VSYY92 pKa = 11.11GRR94 pKa = 11.84SGGGYY99 pKa = 9.17IGSDD103 pKa = 3.21DD104 pKa = 4.61RR105 pKa = 11.84RR106 pKa = 11.84WKK108 pKa = 9.3TPAITRR114 pKa = 11.84QCHH117 pKa = 6.44DD118 pKa = 4.02STSSTLDD125 pKa = 3.2DD126 pKa = 2.96SAYY129 pKa = 10.57RR130 pKa = 11.84VDD132 pKa = 5.02PYY134 pKa = 11.28LLSLIDD140 pKa = 5.72DD141 pKa = 4.33EE142 pKa = 5.08TDD144 pKa = 3.61PDD146 pKa = 4.59PDD148 pKa = 4.26PLVVTCSSSDD158 pKa = 3.53SGSGGAASCSKK169 pKa = 10.46SSEE172 pKa = 4.31RR173 pKa = 11.84PEE175 pKa = 4.09STPSDD180 pKa = 3.58TTDD183 pKa = 2.82VYY185 pKa = 11.77SPFSGG190 pKa = 3.42

Molecular weight: 18.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A183IKG3|A0A183IKG3_9BILA Uncharacterized protein OS=Soboliphyme baturini OX=241478 GN=SBAD_LOCUS4109 PE=4 SV=1
MM1 pKa = 7.43RR2 pKa = 11.84QGSRR6 pKa = 11.84SGLSLLRR13 pKa = 11.84HH14 pKa = 5.69ILSLRR19 pKa = 11.84LWSSPNGPARR29 pKa = 11.84AQTTWRR35 pKa = 11.84IRR37 pKa = 3.28

Molecular weight: 4.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13153

0

13153

3707980

29

6617

281.9

31.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.681 ± 0.02

2.714 ± 0.021

5.293 ± 0.018

5.914 ± 0.027

4.535 ± 0.018

5.392 ± 0.025

2.399 ± 0.009

5.096 ± 0.02

5.451 ± 0.024

9.451 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.493 ± 0.01

4.201 ± 0.016

4.687 ± 0.023

3.84 ± 0.017

6.057 ± 0.02

8.508 ± 0.026

5.371 ± 0.018

7.015 ± 0.02

1.18 ± 0.008

3.11 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski