Rudaeicoccus suwonensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Dermacoccaceae; Rudaeicoccus

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3440 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A561E308|A0A561E308_9MICO Uncharacterized protein OS=Rudaeicoccus suwonensis OX=657409 GN=BKA23_2339 PE=4 SV=1
MM1 pKa = 8.0GDD3 pKa = 3.1TLAQQWHH10 pKa = 5.39VVSHH14 pKa = 7.31LDD16 pKa = 4.07DD17 pKa = 3.62LWEE20 pKa = 6.07GEE22 pKa = 4.3MVAVDD27 pKa = 3.6VQGQSVLLVNVDD39 pKa = 3.37GDD41 pKa = 3.63VFAYY45 pKa = 10.38RR46 pKa = 11.84NRR48 pKa = 11.84CPHH51 pKa = 5.74QEE53 pKa = 3.73WPLDD57 pKa = 4.19DD58 pKa = 5.43GDD60 pKa = 5.22LDD62 pKa = 4.7GEE64 pKa = 4.51KK65 pKa = 9.5LTCAQHH71 pKa = 6.25LWEE74 pKa = 5.11FDD76 pKa = 3.18VSTAEE81 pKa = 5.02GINPANTTLVRR92 pKa = 11.84YY93 pKa = 9.19ACSVDD98 pKa = 3.73DD99 pKa = 5.31DD100 pKa = 4.61GAISVSLPP108 pKa = 3.15

Molecular weight: 11.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A561EBH2|A0A561EBH2_9MICO Amino acid/polyamine/organocation transporter (APC superfamily) OS=Rudaeicoccus suwonensis OX=657409 GN=BKA23_1791 PE=4 SV=1
MM1 pKa = 7.38GFSFQRR7 pKa = 11.84RR8 pKa = 11.84QRR10 pKa = 11.84VGRR13 pKa = 11.84NTSLNVSKK21 pKa = 10.89SGVSASRR28 pKa = 11.84RR29 pKa = 11.84AGRR32 pKa = 11.84VTVNSRR38 pKa = 11.84GRR40 pKa = 11.84ISVNLGRR47 pKa = 11.84GLRR50 pKa = 11.84WRR52 pKa = 11.84GKK54 pKa = 9.36II55 pKa = 3.62

Molecular weight: 6.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3440

0

3440

1140410

29

2176

331.5

35.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.896 ± 0.053

0.819 ± 0.012

6.3 ± 0.042

4.953 ± 0.046

2.883 ± 0.028

8.858 ± 0.037

2.335 ± 0.019

4.199 ± 0.029

2.107 ± 0.031

9.739 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.01 ± 0.018

2.08 ± 0.023

5.363 ± 0.029

3.348 ± 0.025

7.193 ± 0.05

6.005 ± 0.034

6.453 ± 0.045

8.874 ± 0.038

1.569 ± 0.019

2.015 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski