Oricola cellulosilytica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Oricola

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3475 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R0PHY5|A0A4R0PHY5_9RHIZ Uncharacterized protein OS=Oricola cellulosilytica OX=1429082 GN=E0D97_01665 PE=4 SV=1
MM1 pKa = 8.28RR2 pKa = 11.84IRR4 pKa = 11.84NIALAATIGSLTALNGAVAQDD25 pKa = 3.56TLIEE29 pKa = 4.06RR30 pKa = 11.84VEE32 pKa = 4.26IGVLDD37 pKa = 4.04CVVSGGTGYY46 pKa = 10.56IFGSTKK52 pKa = 10.71DD53 pKa = 3.21VGCTYY58 pKa = 10.61KK59 pKa = 10.61PADD62 pKa = 3.81GAPEE66 pKa = 3.73EE67 pKa = 4.82TYY69 pKa = 10.59FGVISKK75 pKa = 10.52YY76 pKa = 10.73GVDD79 pKa = 3.09IGTTEE84 pKa = 3.84ASYY87 pKa = 7.58MTWAVLAPTDD97 pKa = 3.78DD98 pKa = 4.22PYY100 pKa = 11.54RR101 pKa = 11.84PGALAGDD108 pKa = 4.03YY109 pKa = 10.7FGVSAEE115 pKa = 4.11ATVGAGIGANALLGGSDD132 pKa = 3.63EE133 pKa = 4.8TIALQPLSVSGQTGLNFALGVSEE156 pKa = 5.26LEE158 pKa = 4.3LRR160 pKa = 11.84SSADD164 pKa = 2.98

Molecular weight: 16.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R0PK49|A0A4R0PK49_9RHIZ Pantothenate kinase OS=Oricola cellulosilytica OX=1429082 GN=coaA PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATPGGRR28 pKa = 11.84KK29 pKa = 9.06VLATRR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.01RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3475

0

3475

1108791

31

3243

319.1

34.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.977 ± 0.053

0.84 ± 0.012

5.948 ± 0.035

6.251 ± 0.04

3.927 ± 0.027

8.64 ± 0.038

2.04 ± 0.019

5.487 ± 0.032

3.349 ± 0.03

9.569 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.625 ± 0.02

2.769 ± 0.02

4.881 ± 0.027

2.782 ± 0.019

7.068 ± 0.041

5.602 ± 0.028

5.295 ± 0.027

7.447 ± 0.033

1.276 ± 0.018

2.229 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski