Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_84

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.367AlaAla: 5.367 ± 2.723
0.0AlaCys: 0.0 ± 0.0
6.559AlaAsp: 6.559 ± 1.661
3.578AlaGlu: 3.578 ± 2.278
4.77AlaPhe: 4.77 ± 1.549
5.367AlaGly: 5.367 ± 2.317
1.789AlaHis: 1.789 ± 0.921
1.789AlaIle: 1.789 ± 0.815
3.578AlaLys: 3.578 ± 1.164
6.559AlaLeu: 6.559 ± 1.273
0.0AlaMet: 0.0 ± 0.0
2.982AlaAsn: 2.982 ± 1.269
0.596AlaPro: 0.596 ± 1.173
3.578AlaGln: 3.578 ± 1.142
3.578AlaArg: 3.578 ± 0.777
3.578AlaSer: 3.578 ± 2.332
4.174AlaThr: 4.174 ± 1.221
3.578AlaVal: 3.578 ± 1.368
1.789AlaTrp: 1.789 ± 0.793
2.385AlaTyr: 2.385 ± 1.179
0.0AlaXaa: 0.0 ± 0.0
Cys
1.789CysAla: 1.789 ± 1.296
0.596CysCys: 0.596 ± 0.507
0.0CysAsp: 0.0 ± 0.0
1.193CysGlu: 1.193 ± 1.43
0.596CysPhe: 0.596 ± 0.53
0.596CysGly: 0.596 ± 0.443
0.0CysHis: 0.0 ± 0.0
0.596CysIle: 0.596 ± 0.507
1.193CysLys: 1.193 ± 0.515
1.193CysLeu: 1.193 ± 0.515
0.0CysMet: 0.0 ± 0.0
0.596CysAsn: 0.596 ± 0.507
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.193CysArg: 1.193 ± 1.015
1.789CysSer: 1.789 ± 1.522
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.596CysTyr: 0.596 ± 0.507
0.0CysXaa: 0.0 ± 0.0
Asp
2.385AspAla: 2.385 ± 1.544
0.596AspCys: 0.596 ± 0.507
4.174AspAsp: 4.174 ± 3.37
7.156AspGlu: 7.156 ± 1.067
3.578AspPhe: 3.578 ± 0.981
1.789AspGly: 1.789 ± 0.793
0.596AspHis: 0.596 ± 0.443
5.367AspIle: 5.367 ± 1.229
5.367AspLys: 5.367 ± 4.312
5.963AspLeu: 5.963 ± 1.671
1.789AspMet: 1.789 ± 0.55
2.385AspAsn: 2.385 ± 1.396
2.385AspPro: 2.385 ± 1.074
0.596AspGln: 0.596 ± 0.53
2.982AspArg: 2.982 ± 1.506
5.963AspSer: 5.963 ± 1.098
2.982AspThr: 2.982 ± 1.256
4.77AspVal: 4.77 ± 1.813
1.193AspTrp: 1.193 ± 0.515
1.789AspTyr: 1.789 ± 0.389
0.0AspXaa: 0.0 ± 0.0
Glu
4.174GluAla: 4.174 ± 1.646
1.193GluCys: 1.193 ± 0.515
2.982GluAsp: 2.982 ± 1.582
3.578GluGlu: 3.578 ± 1.88
2.385GluPhe: 2.385 ± 1.03
2.982GluGly: 2.982 ± 1.625
1.193GluHis: 1.193 ± 1.43
1.193GluIle: 1.193 ± 1.497
4.174GluLys: 4.174 ± 2.579
5.963GluLeu: 5.963 ± 1.055
0.596GluMet: 0.596 ± 1.03
2.385GluAsn: 2.385 ± 0.576
1.789GluPro: 1.789 ± 0.921
2.982GluGln: 2.982 ± 1.415
4.77GluArg: 4.77 ± 3.143
5.367GluSer: 5.367 ± 4.669
2.385GluThr: 2.385 ± 1.204
3.578GluVal: 3.578 ± 0.981
0.0GluTrp: 0.0 ± 0.0
5.963GluTyr: 5.963 ± 1.229
0.0GluXaa: 0.0 ± 0.0
Phe
3.578PheAla: 3.578 ± 0.77
0.596PheCys: 0.596 ± 0.507
3.578PheAsp: 3.578 ± 1.521
2.385PheGlu: 2.385 ± 1.439
3.578PhePhe: 3.578 ± 1.99
5.367PheGly: 5.367 ± 1.746
1.193PheHis: 1.193 ± 1.015
4.77PheIle: 4.77 ± 1.859
3.578PheLys: 3.578 ± 0.967
1.789PheLeu: 1.789 ± 0.389
1.789PheMet: 1.789 ± 1.211
6.559PheAsn: 6.559 ± 2.414
0.0PhePro: 0.0 ± 0.0
3.578PheGln: 3.578 ± 1.164
1.193PheArg: 1.193 ± 0.515
3.578PheSer: 3.578 ± 1.772
3.578PheThr: 3.578 ± 1.506
2.982PheVal: 2.982 ± 1.29
0.0PheTrp: 0.0 ± 0.0
2.982PheTyr: 2.982 ± 1.577
0.0PheXaa: 0.0 ± 0.0
Gly
0.0GlyAla: 0.0 ± 0.0
0.0GlyCys: 0.0 ± 0.0
5.367GlyAsp: 5.367 ± 2.098
3.578GlyGlu: 3.578 ± 1.843
2.385GlyPhe: 2.385 ± 1.396
5.367GlyGly: 5.367 ± 2.035
1.193GlyHis: 1.193 ± 0.602
2.982GlyIle: 2.982 ± 0.742
4.174GlyLys: 4.174 ± 1.217
4.174GlyLeu: 4.174 ± 1.221
1.789GlyMet: 1.789 ± 0.793
2.385GlyAsn: 2.385 ± 1.439
0.0GlyPro: 0.0 ± 0.0
1.789GlyGln: 1.789 ± 0.815
2.385GlyArg: 2.385 ± 1.772
5.367GlySer: 5.367 ± 2.746
2.982GlyThr: 2.982 ± 0.952
3.578GlyVal: 3.578 ± 1.618
0.0GlyTrp: 0.0 ± 0.0
3.578GlyTyr: 3.578 ± 0.77
0.0GlyXaa: 0.0 ± 0.0
His
0.596HisAla: 0.596 ± 0.443
0.596HisCys: 0.596 ± 0.507
2.982HisAsp: 2.982 ± 1.375
1.789HisGlu: 1.789 ± 0.979
1.789HisPhe: 1.789 ± 1.342
0.596HisGly: 0.596 ± 0.507
0.596HisHis: 0.596 ± 0.507
1.193HisIle: 1.193 ± 1.43
0.0HisLys: 0.0 ± 0.0
1.789HisLeu: 1.789 ± 1.342
1.193HisMet: 1.193 ± 0.886
1.789HisAsn: 1.789 ± 1.634
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.596HisArg: 0.596 ± 0.507
2.385HisSer: 2.385 ± 1.03
0.596HisThr: 0.596 ± 0.507
1.789HisVal: 1.789 ± 0.389
0.0HisTrp: 0.0 ± 0.0
0.596HisTyr: 0.596 ± 0.507
0.0HisXaa: 0.0 ± 0.0
Ile
2.385IleAla: 2.385 ± 1.443
0.596IleCys: 0.596 ± 0.507
4.77IleAsp: 4.77 ± 1.822
1.789IleGlu: 1.789 ± 0.389
1.789IlePhe: 1.789 ± 0.793
2.385IleGly: 2.385 ± 1.45
1.789IleHis: 1.789 ± 0.921
0.0IleIle: 0.0 ± 0.0
2.982IleLys: 2.982 ± 1.887
2.982IleLeu: 2.982 ± 1.312
1.193IleMet: 1.193 ± 0.886
1.789IleAsn: 1.789 ± 0.389
0.0IlePro: 0.0 ± 0.0
2.982IleGln: 2.982 ± 1.217
2.385IleArg: 2.385 ± 1.03
2.982IleSer: 2.982 ± 1.61
4.77IleThr: 4.77 ± 1.594
5.367IleVal: 5.367 ± 2.762
0.0IleTrp: 0.0 ± 0.0
1.193IleTyr: 1.193 ± 1.107
0.0IleXaa: 0.0 ± 0.0
Lys
5.367LysAla: 5.367 ± 1.509
1.789LysCys: 1.789 ± 0.979
2.385LysAsp: 2.385 ± 1.47
2.982LysGlu: 2.982 ± 0.973
3.578LysPhe: 3.578 ± 1.129
2.385LysGly: 2.385 ± 1.074
0.0LysHis: 0.0 ± 0.0
4.174LysIle: 4.174 ± 1.046
1.193LysLys: 1.193 ± 1.015
8.945LysLeu: 8.945 ± 2.827
1.193LysMet: 1.193 ± 1.277
2.982LysAsn: 2.982 ± 2.013
2.982LysPro: 2.982 ± 1.404
1.789LysGln: 1.789 ± 1.171
2.385LysArg: 2.385 ± 2.861
4.77LysSer: 4.77 ± 1.674
0.596LysThr: 0.596 ± 0.443
2.385LysVal: 2.385 ± 2.769
0.596LysTrp: 0.596 ± 0.443
6.559LysTyr: 6.559 ± 1.839
0.0LysXaa: 0.0 ± 0.0
Leu
4.174LeuAla: 4.174 ± 1.646
0.596LeuCys: 0.596 ± 0.443
5.963LeuAsp: 5.963 ± 1.055
2.982LeuGlu: 2.982 ± 1.831
4.174LeuPhe: 4.174 ± 1.684
7.156LeuGly: 7.156 ± 2.209
1.193LeuHis: 1.193 ± 0.602
5.963LeuIle: 5.963 ± 2.132
7.156LeuLys: 7.156 ± 1.125
7.752LeuLeu: 7.752 ± 2.927
0.0LeuMet: 0.0 ± 0.0
5.367LeuAsn: 5.367 ± 0.745
7.156LeuPro: 7.156 ± 1.687
4.77LeuGln: 4.77 ± 2.886
2.982LeuArg: 2.982 ± 0.911
9.541LeuSer: 9.541 ± 2.671
5.367LeuThr: 5.367 ± 2.409
3.578LeuVal: 3.578 ± 1.95
0.596LeuTrp: 0.596 ± 0.53
5.367LeuTyr: 5.367 ± 2.679
0.0LeuXaa: 0.0 ± 0.0
Met
4.174MetAla: 4.174 ± 1.221
0.0MetCys: 0.0 ± 0.0
1.193MetAsp: 1.193 ± 1.32
1.789MetGlu: 1.789 ± 1.402
0.596MetPhe: 0.596 ± 0.443
0.596MetGly: 0.596 ± 0.443
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.596MetLys: 0.596 ± 1.173
2.385MetLeu: 2.385 ± 1.181
0.596MetMet: 0.596 ± 0.53
0.0MetAsn: 0.0 ± 0.0
0.0MetPro: 0.0 ± 0.0
3.578MetGln: 3.578 ± 1.164
0.0MetArg: 0.0 ± 0.0
1.193MetSer: 1.193 ± 0.509
0.596MetThr: 0.596 ± 0.443
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.789MetTyr: 1.789 ± 1.522
0.0MetXaa: 0.0 ± 0.0
Asn
6.559AsnAla: 6.559 ± 2.395
1.193AsnCys: 1.193 ± 1.015
3.578AsnAsp: 3.578 ± 0.957
4.77AsnGlu: 4.77 ± 2.414
4.77AsnPhe: 4.77 ± 1.423
3.578AsnGly: 3.578 ± 1.631
1.193AsnHis: 1.193 ± 1.107
1.789AsnIle: 1.789 ± 0.94
2.385AsnLys: 2.385 ± 1.396
6.559AsnLeu: 6.559 ± 2.835
2.385AsnMet: 2.385 ± 2.04
5.367AsnAsn: 5.367 ± 5.417
5.367AsnPro: 5.367 ± 1.145
2.982AsnGln: 2.982 ± 1.835
4.77AsnArg: 4.77 ± 1.265
6.559AsnSer: 6.559 ± 0.815
1.789AsnThr: 1.789 ± 1.342
2.982AsnVal: 2.982 ± 1.511
0.0AsnTrp: 0.0 ± 0.0
1.789AsnTyr: 1.789 ± 0.921
0.0AsnXaa: 0.0 ± 0.0
Pro
0.596ProAla: 0.596 ± 0.53
0.596ProCys: 0.596 ± 0.507
1.193ProAsp: 1.193 ± 1.015
1.789ProGlu: 1.789 ± 0.965
2.982ProPhe: 2.982 ± 0.742
1.193ProGly: 1.193 ± 1.127
1.193ProHis: 1.193 ± 1.015
0.0ProIle: 0.0 ± 0.0
0.596ProLys: 0.596 ± 0.443
7.752ProLeu: 7.752 ± 3.311
1.193ProMet: 1.193 ± 0.509
2.982ProAsn: 2.982 ± 2.854
0.0ProPro: 0.0 ± 0.0
1.193ProGln: 1.193 ± 1.061
0.596ProArg: 0.596 ± 0.443
3.578ProSer: 3.578 ± 1.925
1.789ProThr: 1.789 ± 1.329
2.982ProVal: 2.982 ± 0.75
1.193ProTrp: 1.193 ± 0.886
1.193ProTyr: 1.193 ± 0.515
0.0ProXaa: 0.0 ± 0.0
Gln
3.578GlnAla: 3.578 ± 1.846
0.596GlnCys: 0.596 ± 0.507
1.193GlnAsp: 1.193 ± 0.509
2.982GlnGlu: 2.982 ± 0.75
1.193GlnPhe: 1.193 ± 1.32
2.385GlnGly: 2.385 ± 1.204
0.0GlnHis: 0.0 ± 0.0
2.982GlnIle: 2.982 ± 0.952
2.385GlnLys: 2.385 ± 1.439
2.385GlnLeu: 2.385 ± 1.487
0.596GlnMet: 0.596 ± 0.53
4.77GlnAsn: 4.77 ± 2.414
2.385GlnPro: 2.385 ± 1.017
1.789GlnGln: 1.789 ± 1.015
2.982GlnArg: 2.982 ± 2.013
4.174GlnSer: 4.174 ± 2.811
2.385GlnThr: 2.385 ± 0.576
4.174GlnVal: 4.174 ± 1.387
0.596GlnTrp: 0.596 ± 0.53
1.789GlnTyr: 1.789 ± 0.793
0.0GlnXaa: 0.0 ± 0.0
Arg
2.982ArgAla: 2.982 ± 1.415
1.193ArgCys: 1.193 ± 1.127
1.789ArgAsp: 1.789 ± 0.94
4.174ArgGlu: 4.174 ± 1.484
4.174ArgPhe: 4.174 ± 1.266
0.596ArgGly: 0.596 ± 0.507
0.596ArgHis: 0.596 ± 0.443
4.174ArgIle: 4.174 ± 0.877
4.77ArgLys: 4.77 ± 2.137
2.982ArgLeu: 2.982 ± 0.952
2.982ArgMet: 2.982 ± 0.941
6.559ArgAsn: 6.559 ± 2.17
1.193ArgPro: 1.193 ± 1.107
3.578ArgGln: 3.578 ± 1.117
1.789ArgArg: 1.789 ± 1.015
3.578ArgSer: 3.578 ± 0.967
1.193ArgThr: 1.193 ± 1.107
1.789ArgVal: 1.789 ± 0.921
0.0ArgTrp: 0.0 ± 0.0
2.982ArgTyr: 2.982 ± 1.29
0.0ArgXaa: 0.0 ± 0.0
Ser
6.559SerAla: 6.559 ± 1.433
0.596SerCys: 0.596 ± 0.507
3.578SerAsp: 3.578 ± 2.038
4.77SerGlu: 4.77 ± 1.423
2.385SerPhe: 2.385 ± 1.45
4.174SerGly: 4.174 ± 0.877
2.982SerHis: 2.982 ± 1.761
2.385SerIle: 2.385 ± 1.45
3.578SerLys: 3.578 ± 1.86
10.733SerLeu: 10.733 ± 7.472
0.0SerMet: 0.0 ± 0.0
2.385SerAsn: 2.385 ± 0.747
4.174SerPro: 4.174 ± 0.877
3.578SerGln: 3.578 ± 1.745
7.752SerArg: 7.752 ± 1.136
10.733SerSer: 10.733 ± 1.975
3.578SerThr: 3.578 ± 1.251
4.77SerVal: 4.77 ± 0.741
1.193SerTrp: 1.193 ± 0.515
5.367SerTyr: 5.367 ± 2.029
0.0SerXaa: 0.0 ± 0.0
Thr
4.174ThrAla: 4.174 ± 2.456
0.0ThrCys: 0.0 ± 0.0
4.77ThrAsp: 4.77 ± 1.754
1.789ThrGlu: 1.789 ± 0.815
2.982ThrPhe: 2.982 ± 1.29
2.385ThrGly: 2.385 ± 1.772
1.789ThrHis: 1.789 ± 0.793
1.789ThrIle: 1.789 ± 1.522
1.789ThrLys: 1.789 ± 0.965
4.77ThrLeu: 4.77 ± 1.494
0.0ThrMet: 0.0 ± 0.0
2.982ThrAsn: 2.982 ± 2.652
2.385ThrPro: 2.385 ± 0.747
1.193ThrGln: 1.193 ± 0.602
4.174ThrArg: 4.174 ± 1.278
4.174ThrSer: 4.174 ± 2.488
1.193ThrThr: 1.193 ± 0.602
2.385ThrVal: 2.385 ± 1.443
0.596ThrTrp: 0.596 ± 0.443
2.385ThrTyr: 2.385 ± 1.396
0.0ThrXaa: 0.0 ± 0.0
Val
4.174ValAla: 4.174 ± 0.877
1.193ValCys: 1.193 ± 1.453
4.77ValAsp: 4.77 ± 3.63
5.367ValGlu: 5.367 ± 1.708
3.578ValPhe: 3.578 ± 2.054
2.385ValGly: 2.385 ± 1.45
1.193ValHis: 1.193 ± 1.497
0.596ValIle: 0.596 ± 0.443
2.982ValLys: 2.982 ± 1.256
4.174ValLeu: 4.174 ± 1.217
0.596ValMet: 0.596 ± 0.53
4.77ValAsn: 4.77 ± 2.71
2.385ValPro: 2.385 ± 0.992
2.385ValGln: 2.385 ± 0.774
2.982ValArg: 2.982 ± 1.577
4.77ValSer: 4.77 ± 0.902
5.367ValThr: 5.367 ± 1.015
1.789ValVal: 1.789 ± 2.891
0.596ValTrp: 0.596 ± 0.443
0.596ValTyr: 0.596 ± 0.443
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.596TrpAsp: 0.596 ± 0.443
0.0TrpGlu: 0.0 ± 0.0
0.596TrpPhe: 0.596 ± 0.443
0.0TrpGly: 0.0 ± 0.0
0.596TrpHis: 0.596 ± 0.443
0.596TrpIle: 0.596 ± 0.443
1.193TrpLys: 1.193 ± 0.886
0.596TrpLeu: 0.596 ± 0.443
0.0TrpMet: 0.0 ± 0.0
2.385TrpAsn: 2.385 ± 1.503
0.596TrpPro: 0.596 ± 0.507
0.596TrpGln: 0.596 ± 0.507
0.0TrpArg: 0.0 ± 0.0
0.596TrpSer: 0.596 ± 0.507
0.596TrpThr: 0.596 ± 0.443
0.596TrpVal: 0.596 ± 0.443
0.0TrpTrp: 0.0 ± 0.0
1.193TrpTyr: 1.193 ± 0.886
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.982TyrAla: 2.982 ± 1.738
0.0TyrCys: 0.0 ± 0.0
2.982TyrAsp: 2.982 ± 1.61
1.193TyrGlu: 1.193 ± 1.015
4.77TyrPhe: 4.77 ± 1.594
1.789TyrGly: 1.789 ± 0.921
1.789TyrHis: 1.789 ± 1.522
1.789TyrIle: 1.789 ± 0.921
5.367TyrLys: 5.367 ± 2.409
2.385TyrLeu: 2.385 ± 1.03
0.596TyrMet: 0.596 ± 0.507
8.945TyrAsn: 8.945 ± 2.25
1.193TyrPro: 1.193 ± 0.515
2.385TyrGln: 2.385 ± 1.017
3.578TyrArg: 3.578 ± 0.967
0.596TyrSer: 0.596 ± 0.53
1.789TyrThr: 1.789 ± 0.815
3.578TyrVal: 3.578 ± 1.772
2.385TyrTrp: 2.385 ± 1.03
0.596TyrTyr: 0.596 ± 0.507
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1678 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski