Sus scrofa papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A223FQV1|A0A223FQV1_9PAPI Regulatory protein E2 OS=Sus scrofa papillomavirus 2 OX=2025338 GN=E2 PE=3 SV=1
MM1 pKa = 7.11MGVEE5 pKa = 4.0PTLRR9 pKa = 11.84DD10 pKa = 3.5IVLMDD15 pKa = 4.54LPCPLHH21 pKa = 6.48LGCEE25 pKa = 4.04EE26 pKa = 4.1RR27 pKa = 11.84LEE29 pKa = 5.23DD30 pKa = 4.51MMLPEE35 pKa = 5.74DD36 pKa = 4.95DD37 pKa = 4.54EE38 pKa = 6.28ASEE41 pKa = 4.41APYY44 pKa = 10.15KK45 pKa = 11.06VSVLCGLCRR54 pKa = 11.84KK55 pKa = 8.76PLKK58 pKa = 10.57FLVICSGEE66 pKa = 3.99NIQRR70 pKa = 11.84LEE72 pKa = 4.0DD73 pKa = 3.07VAARR77 pKa = 11.84VKK79 pKa = 9.92YY80 pKa = 10.63LCRR83 pKa = 11.84CCSARR88 pKa = 11.84FDD90 pKa = 3.59

Molecular weight: 10.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A223FQV2|A0A223FQV2_9PAPI Major capsid protein L1 OS=Sus scrofa papillomavirus 2 OX=2025338 GN=L1 PE=3 SV=1
MM1 pKa = 7.43EE2 pKa = 6.17RR3 pKa = 11.84ICHH6 pKa = 6.31RR7 pKa = 11.84LNVVQEE13 pKa = 4.3EE14 pKa = 4.35LLSLYY19 pKa = 7.87EE20 pKa = 4.02TAQTSLQSQIRR31 pKa = 11.84HH32 pKa = 5.36WDD34 pKa = 3.5LVRR37 pKa = 11.84KK38 pKa = 9.71EE39 pKa = 4.35MIFFYY44 pKa = 10.37AARR47 pKa = 11.84QSGVDD52 pKa = 3.3SIGFQKK58 pKa = 10.43VPPLQVSQAKK68 pKa = 9.82AKK70 pKa = 10.07EE71 pKa = 4.19AIEE74 pKa = 4.0MQMILQSLGEE84 pKa = 4.02SDD86 pKa = 4.37FAQEE90 pKa = 3.72QWTLSDD96 pKa = 3.3TSRR99 pKa = 11.84EE100 pKa = 3.9LWLCPPQGCFKK111 pKa = 10.76KK112 pKa = 9.92HH113 pKa = 5.46GSSVDD118 pKa = 2.87VWYY121 pKa = 10.33DD122 pKa = 3.74EE123 pKa = 4.31NPEE126 pKa = 3.85NANRR130 pKa = 11.84YY131 pKa = 8.1VSWGSIYY138 pKa = 10.67HH139 pKa = 6.86LDD141 pKa = 3.75GNEE144 pKa = 3.61RR145 pKa = 11.84WRR147 pKa = 11.84KK148 pKa = 7.47TEE150 pKa = 3.79GLCDD154 pKa = 3.58HH155 pKa = 7.01TGLYY159 pKa = 10.17YY160 pKa = 10.47VDD162 pKa = 3.25EE163 pKa = 4.6SGYY166 pKa = 9.6RR167 pKa = 11.84RR168 pKa = 11.84YY169 pKa = 10.25YY170 pKa = 10.3IKK172 pKa = 10.71FSVDD176 pKa = 2.64AKK178 pKa = 10.31RR179 pKa = 11.84YY180 pKa = 8.49SATGQWEE187 pKa = 4.64VKK189 pKa = 9.94FKK191 pKa = 11.2NQIFSPILPVTSTVPATQCGGPAPEE216 pKa = 4.17SCGRR220 pKa = 11.84QTPEE224 pKa = 3.61QQRR227 pKa = 11.84IASPPGGHH235 pKa = 6.07GVSPPASRR243 pKa = 11.84CRR245 pKa = 11.84GASPGTDD252 pKa = 2.64RR253 pKa = 11.84ADD255 pKa = 3.54TPPPKK260 pKa = 9.89RR261 pKa = 11.84PRR263 pKa = 11.84DD264 pKa = 3.65TRR266 pKa = 11.84PTEE269 pKa = 3.76TSKK272 pKa = 10.73GRR274 pKa = 11.84RR275 pKa = 11.84RR276 pKa = 11.84RR277 pKa = 11.84SIRR280 pKa = 11.84PGLGPRR286 pKa = 11.84TSIVATGPVWVPPIIRR302 pKa = 11.84PPRR305 pKa = 11.84FPGSGSPWAARR316 pKa = 11.84WYY318 pKa = 10.75AKK320 pKa = 10.45FEE322 pKa = 3.84EE323 pKa = 4.67RR324 pKa = 11.84QRR326 pKa = 11.84QQQQQQQQQQQAPIRR341 pKa = 11.84FPGPADD347 pKa = 3.46TGDD350 pKa = 3.64SSGSRR355 pKa = 11.84VSRR358 pKa = 11.84DD359 pKa = 3.35PGHH362 pKa = 6.6SSRR365 pKa = 11.84DD366 pKa = 3.4PSDD369 pKa = 3.9PGDD372 pKa = 3.53TRR374 pKa = 11.84EE375 pKa = 4.86PGDD378 pKa = 3.61PCDD381 pKa = 4.01PSEE384 pKa = 4.64EE385 pKa = 4.5GPATEE390 pKa = 4.84SDD392 pKa = 3.75SGSDD396 pKa = 3.04SDD398 pKa = 4.05PNTRR402 pKa = 11.84RR403 pKa = 11.84EE404 pKa = 4.28SPPGPWDD411 pKa = 3.49TRR413 pKa = 11.84PTGPQPPRR421 pKa = 11.84TPEE424 pKa = 3.48EE425 pKa = 3.75AAAAAAATVTPPGAKK440 pKa = 9.03EE441 pKa = 3.24KK442 pKa = 10.42AYY444 pKa = 10.8RR445 pKa = 11.84EE446 pKa = 4.12GRR448 pKa = 11.84GLRR451 pKa = 11.84RR452 pKa = 11.84QRR454 pKa = 11.84PPTPPEE460 pKa = 3.98CYY462 pKa = 9.4RR463 pKa = 11.84RR464 pKa = 11.84VPFTRR469 pKa = 11.84QQSTKK474 pKa = 10.41SRR476 pKa = 11.84NTTLVSPKK484 pKa = 8.64QTPVKK489 pKa = 10.11QGPSSPLAASTPAAATRR506 pKa = 11.84SRR508 pKa = 11.84TTRR511 pKa = 11.84RR512 pKa = 11.84NRR514 pKa = 11.84SRR516 pKa = 11.84SPTNPVASQPVGIAGRR532 pKa = 11.84TRR534 pKa = 11.84RR535 pKa = 11.84SRR537 pKa = 11.84YY538 pKa = 8.21PVEE541 pKa = 4.27EE542 pKa = 4.34EE543 pKa = 4.34SCGGDD548 pKa = 3.13PGGTLQSLRR557 pKa = 11.84DD558 pKa = 3.58PDD560 pKa = 3.55NQRR563 pKa = 11.84EE564 pKa = 4.05QRR566 pKa = 11.84PGQSLPVLGSPAVVLLKK583 pKa = 11.04GGTNQLKK590 pKa = 8.58CCRR593 pKa = 11.84YY594 pKa = 9.45RR595 pKa = 11.84FRR597 pKa = 11.84TRR599 pKa = 11.84HH600 pKa = 3.5QHH602 pKa = 6.71LFLHH606 pKa = 7.08CSSTWYY612 pKa = 9.56WSDD615 pKa = 2.8GNRR618 pKa = 11.84IGRR621 pKa = 11.84SRR623 pKa = 11.84MFLTFRR629 pKa = 11.84DD630 pKa = 3.97PEE632 pKa = 4.05QRR634 pKa = 11.84DD635 pKa = 3.46LFLQTVSIPRR645 pKa = 11.84DD646 pKa = 3.19VDD648 pKa = 3.31IVTGTLFSLL657 pKa = 4.44

Molecular weight: 73.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2534

90

657

422.3

47.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.959 ± 0.3

2.407 ± 0.631

6.117 ± 0.403

5.722 ± 0.356

3.867 ± 0.511

7.103 ± 0.606

1.697 ± 0.127

4.301 ± 0.545

4.538 ± 0.891

8.09 ± 0.757

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.618 ± 0.435

3.473 ± 0.897

7.419 ± 1.133

4.657 ± 0.613

7.301 ± 1.054

8.287 ± 0.889

7.064 ± 0.765

5.998 ± 0.425

1.342 ± 0.337

3.039 ± 0.482
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski