Deinococcus cellulosilyticus NBRC 106333 = KACC 11606

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus cellulosilyticus

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5844 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A511MZM7|A0A511MZM7_9DEIO Uncharacterized protein OS=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 OX=1223518 GN=DC3_16440 PE=3 SV=1
MM1 pKa = 7.27IAAFKK6 pKa = 10.52VDD8 pKa = 4.3KK9 pKa = 10.45FQQLTLEE16 pKa = 4.31QKK18 pKa = 10.77GQFQQCCPYY27 pKa = 10.26VAFGEE32 pKa = 4.26PVIWPIPVNGAVWMLMSDD50 pKa = 3.48PRR52 pKa = 11.84ITTEE56 pKa = 3.45ACQQMEE62 pKa = 4.39QVALDD67 pKa = 3.85VGWFVPDD74 pKa = 3.75DD75 pKa = 4.09ACWFEE80 pKa = 5.03QIPQSWYY87 pKa = 7.91PQEE90 pKa = 4.43EE91 pKa = 4.49EE92 pKa = 4.4PEE94 pKa = 4.19EE95 pKa = 4.03

Molecular weight: 11.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A511N6X9|A0A511N6X9_9DEIO DNA_binding_1 domain-containing protein OS=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 OX=1223518 GN=DC3_38060 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.21QPNRR9 pKa = 11.84SKK11 pKa = 10.79RR12 pKa = 11.84AKK14 pKa = 8.14THH16 pKa = 5.27GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 7.4TTSGRR28 pKa = 11.84RR29 pKa = 11.84VLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.11GRR39 pKa = 11.84HH40 pKa = 5.34RR41 pKa = 11.84LTVV44 pKa = 3.07

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5844

0

5844

1774904

39

3923

303.7

33.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.764 ± 0.029

0.741 ± 0.01

4.966 ± 0.024

6.18 ± 0.038

3.906 ± 0.02

7.649 ± 0.036

2.621 ± 0.023

4.733 ± 0.028

4.271 ± 0.031

11.386 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.353 ± 0.016

3.282 ± 0.03

5.028 ± 0.023

5.015 ± 0.027

5.676 ± 0.034

5.773 ± 0.033

6.001 ± 0.041

7.372 ± 0.03

1.476 ± 0.015

2.805 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski