Streptosporangiales bacterium

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; unclassified Streptosporangiales

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5548 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6N7I6E9|A0A6N7I6E9_9ACTN ATP-binding cassette domain-containing protein OS=Streptosporangiales bacterium OX=2604148 GN=GEV03_01750 PE=4 SV=1
MM1 pKa = 7.78HH2 pKa = 8.41DD3 pKa = 5.08DD4 pKa = 3.77TPQDD8 pKa = 3.68PFRR11 pKa = 11.84DD12 pKa = 4.0DD13 pKa = 4.15PFDD16 pKa = 4.23PSAALGDD23 pKa = 4.48DD24 pKa = 3.66EE25 pKa = 6.95DD26 pKa = 4.43EE27 pKa = 4.99ARR29 pKa = 11.84QLDD32 pKa = 3.86PAEE35 pKa = 4.05QEE37 pKa = 4.28EE38 pKa = 4.63VLSDD42 pKa = 3.72LADD45 pKa = 3.77LEE47 pKa = 4.54VFRR50 pKa = 11.84ALLEE54 pKa = 4.15PQGVKK59 pKa = 10.52GMAIDD64 pKa = 4.26CADD67 pKa = 4.07CGEE70 pKa = 4.03VHH72 pKa = 6.45YY73 pKa = 10.82LGWDD77 pKa = 3.56LLHH80 pKa = 7.0GNLRR84 pKa = 11.84QLLEE88 pKa = 4.13NGGQQVHH95 pKa = 6.15EE96 pKa = 4.6PACGPDD102 pKa = 3.2PSEE105 pKa = 4.05YY106 pKa = 9.57VTWDD110 pKa = 3.31YY111 pKa = 11.93ARR113 pKa = 11.84GYY115 pKa = 9.73VDD117 pKa = 4.85GVIDD121 pKa = 3.83SEE123 pKa = 4.34EE124 pKa = 4.38SKK126 pKa = 11.18GYY128 pKa = 10.61

Molecular weight: 14.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6N7IBJ8|A0A6N7IBJ8_9ACTN ComF family protein OS=Streptosporangiales bacterium OX=2604148 GN=GEV03_10235 PE=4 SV=1
MM1 pKa = 7.46GSIIKK6 pKa = 10.03KK7 pKa = 8.4RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.52RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.51LLKK22 pKa = 8.15KK23 pKa = 9.25TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.81KK32 pKa = 9.63

Molecular weight: 4.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5548

0

5548

1684724

26

1560

303.7

32.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.829 ± 0.048

0.866 ± 0.01

5.905 ± 0.024

6.084 ± 0.032

2.904 ± 0.02

9.482 ± 0.031

2.178 ± 0.017

3.582 ± 0.022

1.724 ± 0.021

10.357 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.841 ± 0.013

1.746 ± 0.014

6.025 ± 0.031

2.655 ± 0.018

8.889 ± 0.032

4.856 ± 0.021

5.387 ± 0.019

8.952 ± 0.032

1.508 ± 0.014

2.229 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski