Cutibacterium granulosum DSM 20700

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Cutibacterium; Cutibacterium granulosum

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1962 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U1F026|U1F026_9ACTN ABC transporter OS=Cutibacterium granulosum DSM 20700 OX=1160719 GN=H641_03400 PE=4 SV=1
MM1 pKa = 6.84NTTYY5 pKa = 10.26TITGMTCEE13 pKa = 4.4HH14 pKa = 6.67CVKK17 pKa = 10.72AITEE21 pKa = 4.2EE22 pKa = 4.2VSAIDD27 pKa = 4.26GVDD30 pKa = 3.0KK31 pKa = 11.23VYY33 pKa = 11.34VSLEE37 pKa = 4.24TGSMTIDD44 pKa = 3.26SAEE47 pKa = 4.63EE48 pKa = 3.57ISMDD52 pKa = 5.19AINKK56 pKa = 9.62ALDD59 pKa = 3.37EE60 pKa = 4.77AGEE63 pKa = 4.16YY64 pKa = 8.34TATKK68 pKa = 10.43ADD70 pKa = 3.77SLDD73 pKa = 3.85TAGHH77 pKa = 6.68PEE79 pKa = 3.92GG80 pKa = 4.71

Molecular weight: 8.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U1GJ04|U1GJ04_9ACTN DNA mismatch endonuclease Vsr OS=Cutibacterium granulosum DSM 20700 OX=1160719 GN=H641_05265 PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.55LLKK22 pKa = 8.44KK23 pKa = 9.1TRR25 pKa = 11.84IQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84AGKK33 pKa = 9.79

Molecular weight: 4.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1962

0

1962

595837

22

1860

303.7

32.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.275 ± 0.06

0.995 ± 0.019

6.634 ± 0.056

5.338 ± 0.055

2.695 ± 0.038

8.52 ± 0.043

2.634 ± 0.026

4.599 ± 0.046

2.727 ± 0.05

9.304 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.419 ± 0.024

2.354 ± 0.03

5.323 ± 0.046

3.465 ± 0.029

6.984 ± 0.052

6.161 ± 0.04

6.483 ± 0.051

8.705 ± 0.05

1.52 ± 0.026

1.866 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski