Mucilaginibacter lappiensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5808 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N7BPI7|A0A1N7BPI7_9SPHI Quinoprotein glucose dehydrogenase OS=Mucilaginibacter lappiensis OX=354630 GN=SAMN05421821_108102 PE=4 SV=1
MM1 pKa = 7.19YY2 pKa = 7.77WTLEE6 pKa = 4.21LASHH10 pKa = 7.01LEE12 pKa = 4.08DD13 pKa = 4.93APWPATKK20 pKa = 10.54DD21 pKa = 3.44EE22 pKa = 5.26LIDD25 pKa = 3.48YY26 pKa = 8.56AIRR29 pKa = 11.84SGAPVEE35 pKa = 4.53VIEE38 pKa = 4.56NLQALEE44 pKa = 4.69DD45 pKa = 4.28DD46 pKa = 4.31GEE48 pKa = 4.31PYY50 pKa = 11.05EE51 pKa = 4.65NIEE54 pKa = 4.81EE55 pKa = 4.08IWPDD59 pKa = 3.85YY60 pKa = 7.47PTKK63 pKa = 10.94DD64 pKa = 3.05DD65 pKa = 4.15FFFNEE70 pKa = 4.51DD71 pKa = 3.17EE72 pKa = 4.46YY73 pKa = 11.99

Molecular weight: 8.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1N7FKT2|A0A1N7FKT2_9SPHI Glycosyl hydrolases family 38 C-terminal domain-containing protein OS=Mucilaginibacter lappiensis OX=354630 GN=SAMN05421821_11879 PE=4 SV=1
MM1 pKa = 7.58GFGIIIIRR9 pKa = 11.84ILFITCMVFIIGYY22 pKa = 8.73VFGGFSKK29 pKa = 10.68KK30 pKa = 10.08SALTSITKK38 pKa = 9.69VAAILVIILFVATNMLFMINRR59 pKa = 11.84FEE61 pKa = 4.02YY62 pKa = 10.7FRR64 pKa = 11.84GKK66 pKa = 8.3GHH68 pKa = 7.28RR69 pKa = 11.84RR70 pKa = 11.84QCDD73 pKa = 3.11TVYY76 pKa = 11.08SRR78 pKa = 11.84GKK80 pKa = 8.04HH81 pKa = 3.83TT82 pKa = 4.27

Molecular weight: 9.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5808

0

5808

1973590

26

3993

339.8

38.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.505 ± 0.035

0.778 ± 0.01

5.433 ± 0.024

5.102 ± 0.035

4.893 ± 0.021

6.871 ± 0.032

1.99 ± 0.016

7.392 ± 0.03

6.928 ± 0.031

9.485 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.015

5.746 ± 0.031

3.935 ± 0.018

3.906 ± 0.019

3.726 ± 0.021

6.29 ± 0.025

6.001 ± 0.037

6.325 ± 0.024

1.232 ± 0.012

4.243 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski