Amino acid dipepetide frequency for Magnaporthe oryzae virus 2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
19.79AlaAla: 19.79 ± 2.723
1.855AlaCys: 1.855 ± 0.368
4.947AlaAsp: 4.947 ± 2.474
5.566AlaGlu: 5.566 ± 0.305
5.566AlaPhe: 5.566 ± 1.289
12.369AlaGly: 12.369 ± 3.396
3.711AlaHis: 3.711 ± 1.656
4.947AlaIle: 4.947 ± 0.083
1.855AlaLys: 1.855 ± 0.43
11.75AlaLeu: 11.75 ± 2.19
1.237AlaMet: 1.237 ± 0.776
6.184AlaAsn: 6.184 ± 0.901
9.276AlaPro: 9.276 ± 2.148
3.092AlaGln: 3.092 ± 0.45
6.803AlaArg: 6.803 ± 1.31
11.132AlaSer: 11.132 ± 0.611
9.895AlaThr: 9.895 ± 3.023
8.04AlaVal: 8.04 ± 0.533
2.474AlaTrp: 2.474 ± 0.756
2.474AlaTyr: 2.474 ± 0.041
0.0AlaXaa: 0.0 ± 0.0
Cys
1.855CysAla: 1.855 ± 0.368
0.0CysCys: 0.0 ± 0.0
1.855CysAsp: 1.855 ± 0.368
0.0CysGlu: 0.0 ± 0.0
1.237CysPhe: 1.237 ± 0.818
0.0CysGly: 0.0 ± 0.0
0.618CysHis: 0.618 ± 0.388
0.618CysIle: 0.618 ± 0.388
0.618CysLys: 0.618 ± 0.388
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.618CysGln: 0.618 ± 0.388
0.0CysArg: 0.0 ± 0.0
0.618CysSer: 0.618 ± 0.409
1.237CysThr: 1.237 ± 0.021
1.237CysVal: 1.237 ± 0.818
0.0CysTrp: 0.0 ± 0.0
0.618CysTyr: 0.618 ± 0.388
0.0CysXaa: 0.0 ± 0.0
Asp
5.566AspAla: 5.566 ± 0.492
1.237AspCys: 1.237 ± 0.021
3.092AspAsp: 3.092 ± 1.941
2.474AspGlu: 2.474 ± 0.839
1.855AspPhe: 1.855 ± 0.43
2.474AspGly: 2.474 ± 0.756
1.855AspHis: 1.855 ± 0.368
2.474AspIle: 2.474 ± 0.041
0.618AspLys: 0.618 ± 0.388
3.711AspLeu: 3.711 ± 0.062
0.0AspMet: 0.0 ± 0.0
0.618AspAsn: 0.618 ± 0.409
5.566AspPro: 5.566 ± 1.289
1.237AspGln: 1.237 ± 0.818
4.329AspArg: 4.329 ± 0.326
3.092AspSer: 3.092 ± 1.247
3.711AspThr: 3.711 ± 0.062
2.474AspVal: 2.474 ± 0.041
0.618AspTrp: 0.618 ± 0.388
2.474AspTyr: 2.474 ± 0.756
0.0AspXaa: 0.0 ± 0.0
Glu
7.421GluAla: 7.421 ± 1.47
0.0GluCys: 0.0 ± 0.0
2.474GluAsp: 2.474 ± 0.041
3.092GluGlu: 3.092 ± 1.144
1.237GluPhe: 1.237 ± 0.021
3.092GluGly: 3.092 ± 2.045
4.329GluHis: 4.329 ± 0.471
1.237GluIle: 1.237 ± 0.776
1.237GluLys: 1.237 ± 0.021
2.474GluLeu: 2.474 ± 1.553
0.618GluMet: 0.618 ± 0.409
0.0GluAsn: 0.0 ± 0.0
3.711GluPro: 3.711 ± 0.859
1.237GluGln: 1.237 ± 0.021
6.803GluArg: 6.803 ± 1.879
3.092GluSer: 3.092 ± 1.247
1.855GluThr: 1.855 ± 1.165
1.237GluVal: 1.237 ± 0.021
0.0GluTrp: 0.0 ± 0.0
1.855GluTyr: 1.855 ± 0.43
0.0GluXaa: 0.0 ± 0.0
Phe
4.329PheAla: 4.329 ± 1.268
0.618PheCys: 0.618 ± 0.409
3.092PheAsp: 3.092 ± 0.347
2.474PheGlu: 2.474 ± 0.839
0.0PhePhe: 0.0 ± 0.0
1.237PheGly: 1.237 ± 0.818
0.0PheHis: 0.0 ± 0.0
2.474PheIle: 2.474 ± 0.839
0.618PheLys: 0.618 ± 0.409
3.092PheLeu: 3.092 ± 1.144
0.618PheMet: 0.618 ± 0.409
1.237PheAsn: 1.237 ± 0.021
3.711PhePro: 3.711 ± 0.859
0.0PheGln: 0.0 ± 0.0
3.092PheArg: 3.092 ± 1.247
1.237PheSer: 1.237 ± 0.818
0.618PheThr: 0.618 ± 0.409
0.0PheVal: 0.0 ± 0.0
1.237PheTrp: 1.237 ± 0.021
0.618PheTyr: 0.618 ± 0.409
0.0PheXaa: 0.0 ± 0.0
Gly
11.75GlyAla: 11.75 ± 2.19
0.618GlyCys: 0.618 ± 0.388
3.711GlyAsp: 3.711 ± 0.062
2.474GlyGlu: 2.474 ± 0.839
1.855GlyPhe: 1.855 ± 1.227
11.75GlyGly: 11.75 ± 4.581
1.855GlyHis: 1.855 ± 0.368
1.855GlyIle: 1.855 ± 0.43
1.855GlyLys: 1.855 ± 1.165
4.947GlyLeu: 4.947 ± 1.511
1.855GlyMet: 1.855 ± 0.43
4.947GlyAsn: 4.947 ± 0.083
6.803GlyPro: 6.803 ± 2.904
3.711GlyGln: 3.711 ± 0.859
4.947GlyArg: 4.947 ± 0.083
3.711GlySer: 3.711 ± 1.532
6.803GlyThr: 6.803 ± 2.904
8.04GlyVal: 8.04 ± 0.264
0.618GlyTrp: 0.618 ± 0.388
3.711GlyTyr: 3.711 ± 0.735
0.0GlyXaa: 0.0 ± 0.0
His
4.329HisAla: 4.329 ± 2.065
0.618HisCys: 0.618 ± 0.409
0.618HisAsp: 0.618 ± 0.388
3.711HisGlu: 3.711 ± 1.656
1.237HisPhe: 1.237 ± 0.021
1.855HisGly: 1.855 ± 0.368
0.618HisHis: 0.618 ± 0.409
0.618HisIle: 0.618 ± 0.409
0.618HisLys: 0.618 ± 0.409
1.855HisLeu: 1.855 ± 0.368
0.0HisMet: 0.0 ± 0.0
1.237HisAsn: 1.237 ± 0.776
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
1.237HisArg: 1.237 ± 0.776
1.855HisSer: 1.855 ± 0.368
0.618HisThr: 0.618 ± 0.409
3.092HisVal: 3.092 ± 0.347
0.618HisTrp: 0.618 ± 0.388
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.711IleAla: 3.711 ± 0.062
1.237IleCys: 1.237 ± 0.021
1.855IleAsp: 1.855 ± 0.43
3.092IleGlu: 3.092 ± 0.347
1.855IlePhe: 1.855 ± 0.368
2.474IleGly: 2.474 ± 0.839
0.618IleHis: 0.618 ± 0.409
2.474IleIle: 2.474 ± 0.756
1.237IleLys: 1.237 ± 0.021
3.711IleLeu: 3.711 ± 1.532
0.0IleMet: 0.0 ± 0.304
2.474IleAsn: 2.474 ± 0.041
3.092IlePro: 3.092 ± 2.045
1.237IleGln: 1.237 ± 0.776
3.092IleArg: 3.092 ± 1.941
3.711IleSer: 3.711 ± 0.859
0.618IleThr: 0.618 ± 0.409
0.618IleVal: 0.618 ± 0.409
0.0IleTrp: 0.0 ± 0.0
1.855IleTyr: 1.855 ± 1.165
0.0IleXaa: 0.0 ± 0.0
Lys
2.474LysAla: 2.474 ± 1.553
0.0LysCys: 0.0 ± 0.0
1.237LysAsp: 1.237 ± 0.776
0.0LysGlu: 0.0 ± 0.0
0.618LysPhe: 0.618 ± 0.409
1.855LysGly: 1.855 ± 0.368
0.618LysHis: 0.618 ± 0.409
0.618LysIle: 0.618 ± 0.388
0.0LysLys: 0.0 ± 0.0
2.474LysLeu: 2.474 ± 0.756
1.237LysMet: 1.237 ± 0.818
0.0LysAsn: 0.0 ± 0.0
0.0LysPro: 0.0 ± 0.0
0.618LysGln: 0.618 ± 0.388
1.237LysArg: 1.237 ± 0.776
1.237LysSer: 1.237 ± 0.776
3.092LysThr: 3.092 ± 0.347
3.092LysVal: 3.092 ± 0.347
0.0LysTrp: 0.0 ± 0.0
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
11.75LeuAla: 11.75 ± 1.392
0.0LeuCys: 0.0 ± 0.0
7.421LeuAsp: 7.421 ± 0.921
4.947LeuGlu: 4.947 ± 2.309
2.474LeuPhe: 2.474 ± 0.041
8.04LeuGly: 8.04 ± 1.061
0.618LeuHis: 0.618 ± 0.388
3.711LeuIle: 3.711 ± 0.859
3.092LeuLys: 3.092 ± 1.144
7.421LeuLeu: 7.421 ± 3.064
1.237LeuMet: 1.237 ± 0.776
2.474LeuAsn: 2.474 ± 1.553
6.803LeuPro: 6.803 ± 0.512
1.855LeuGln: 1.855 ± 0.368
8.658LeuArg: 8.658 ± 2.246
3.711LeuSer: 3.711 ± 2.329
6.803LeuThr: 6.803 ± 3.473
4.329LeuVal: 4.329 ± 1.92
1.237LeuTrp: 1.237 ± 0.021
2.474LeuTyr: 2.474 ± 0.839
0.0LeuXaa: 0.0 ± 0.0
Met
3.711MetAla: 3.711 ± 0.062
0.0MetCys: 0.0 ± 0.0
1.237MetAsp: 1.237 ± 0.021
0.618MetGlu: 0.618 ± 0.409
0.0MetPhe: 0.0 ± 0.0
1.237MetGly: 1.237 ± 0.021
0.0MetHis: 0.0 ± 0.0
1.237MetIle: 1.237 ± 0.776
0.618MetLys: 0.618 ± 0.388
0.618MetLeu: 0.618 ± 0.388
1.237MetMet: 1.237 ± 0.776
0.618MetAsn: 0.618 ± 0.388
0.618MetPro: 0.618 ± 0.388
0.0MetGln: 0.0 ± 0.0
1.855MetArg: 1.855 ± 1.227
1.237MetSer: 1.237 ± 0.776
1.237MetThr: 1.237 ± 0.776
1.855MetVal: 1.855 ± 0.43
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.711AsnAla: 3.711 ± 0.735
0.0AsnCys: 0.0 ± 0.0
1.855AsnAsp: 1.855 ± 0.43
1.237AsnGlu: 1.237 ± 0.021
1.855AsnPhe: 1.855 ± 1.227
3.092AsnGly: 3.092 ± 1.144
0.618AsnHis: 0.618 ± 0.409
0.618AsnIle: 0.618 ± 0.388
0.618AsnLys: 0.618 ± 0.388
1.237AsnLeu: 1.237 ± 0.818
0.618AsnMet: 0.618 ± 0.409
1.237AsnAsn: 1.237 ± 0.818
3.092AsnPro: 3.092 ± 1.144
1.855AsnGln: 1.855 ± 0.43
0.618AsnArg: 0.618 ± 0.388
2.474AsnSer: 2.474 ± 0.756
2.474AsnThr: 2.474 ± 0.839
2.474AsnVal: 2.474 ± 0.041
0.618AsnTrp: 0.618 ± 0.388
3.092AsnTyr: 3.092 ± 0.347
0.0AsnXaa: 0.0 ± 0.0
Pro
9.895ProAla: 9.895 ± 3.354
0.618ProCys: 0.618 ± 0.409
1.855ProAsp: 1.855 ± 0.368
1.855ProGlu: 1.855 ± 0.368
1.237ProPhe: 1.237 ± 0.776
5.566ProGly: 5.566 ± 1.289
1.855ProHis: 1.855 ± 0.43
4.947ProIle: 4.947 ± 0.083
1.237ProLys: 1.237 ± 0.776
7.421ProLeu: 7.421 ± 0.673
1.855ProMet: 1.855 ± 1.165
0.618ProAsn: 0.618 ± 0.409
7.421ProPro: 7.421 ± 2.516
3.711ProGln: 3.711 ± 1.656
4.947ProArg: 4.947 ± 0.88
4.947ProSer: 4.947 ± 0.88
6.184ProThr: 6.184 ± 4.089
3.711ProVal: 3.711 ± 0.735
0.0ProTrp: 0.0 ± 0.0
1.237ProTyr: 1.237 ± 0.818
0.0ProXaa: 0.0 ± 0.0
Gln
2.474GlnAla: 2.474 ± 0.041
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
0.618GlnGlu: 0.618 ± 0.388
0.618GlnPhe: 0.618 ± 0.409
4.329GlnGly: 4.329 ± 1.268
0.618GlnHis: 0.618 ± 0.388
1.855GlnIle: 1.855 ± 0.43
0.618GlnLys: 0.618 ± 0.409
4.329GlnLeu: 4.329 ± 1.123
1.237GlnMet: 1.237 ± 0.297
0.0GlnAsn: 0.0 ± 0.0
1.855GlnPro: 1.855 ± 1.227
0.0GlnGln: 0.0 ± 0.0
1.237GlnArg: 1.237 ± 0.818
3.711GlnSer: 3.711 ± 0.735
1.855GlnThr: 1.855 ± 0.43
0.618GlnVal: 0.618 ± 0.388
0.618GlnTrp: 0.618 ± 0.409
1.237GlnTyr: 1.237 ± 0.776
0.0GlnXaa: 0.0 ± 0.0
Arg
11.75ArgAla: 11.75 ± 0.595
0.618ArgCys: 0.618 ± 0.388
4.329ArgAsp: 4.329 ± 0.326
4.329ArgGlu: 4.329 ± 1.123
1.237ArgPhe: 1.237 ± 0.818
5.566ArgGly: 5.566 ± 2.086
3.711ArgHis: 3.711 ± 0.859
1.855ArgIle: 1.855 ± 0.368
0.0ArgLys: 0.0 ± 0.0
8.04ArgLeu: 8.04 ± 2.655
1.855ArgMet: 1.855 ± 1.165
0.618ArgAsn: 0.618 ± 0.409
3.092ArgPro: 3.092 ± 1.144
3.092ArgGln: 3.092 ± 0.347
6.184ArgArg: 6.184 ± 0.694
6.184ArgSer: 6.184 ± 0.694
5.566ArgThr: 5.566 ± 0.305
4.329ArgVal: 4.329 ± 1.123
1.855ArgTrp: 1.855 ± 1.165
0.618ArgTyr: 0.618 ± 0.409
0.0ArgXaa: 0.0 ± 0.0
Ser
3.092SerAla: 3.092 ± 1.247
1.237SerCys: 1.237 ± 0.818
1.855SerAsp: 1.855 ± 0.368
2.474SerGlu: 2.474 ± 0.041
2.474SerPhe: 2.474 ± 0.041
4.329SerGly: 4.329 ± 1.123
2.474SerHis: 2.474 ± 0.756
4.329SerIle: 4.329 ± 0.471
1.855SerLys: 1.855 ± 0.368
8.04SerLeu: 8.04 ± 0.533
1.237SerMet: 1.237 ± 0.776
4.947SerAsn: 4.947 ± 0.083
6.184SerPro: 6.184 ± 0.104
2.474SerGln: 2.474 ± 0.756
4.947SerArg: 4.947 ± 1.511
3.092SerSer: 3.092 ± 0.347
4.329SerThr: 4.329 ± 1.123
4.947SerVal: 4.947 ± 0.083
0.618SerTrp: 0.618 ± 0.388
2.474SerTyr: 2.474 ± 0.041
0.0SerXaa: 0.0 ± 0.0
Thr
7.421ThrAla: 7.421 ± 3.313
1.237ThrCys: 1.237 ± 0.776
3.711ThrAsp: 3.711 ± 0.859
1.855ThrGlu: 1.855 ± 1.165
0.618ThrPhe: 0.618 ± 0.388
5.566ThrGly: 5.566 ± 0.305
0.618ThrHis: 0.618 ± 0.388
0.618ThrIle: 0.618 ± 0.388
1.237ThrLys: 1.237 ± 0.776
6.184ThrLeu: 6.184 ± 2.288
1.237ThrMet: 1.237 ± 0.818
2.474ThrAsn: 2.474 ± 0.041
3.092ThrPro: 3.092 ± 0.45
0.618ThrGln: 0.618 ± 0.409
6.803ThrArg: 6.803 ± 1.082
3.711ThrSer: 3.711 ± 0.859
8.04ThrThr: 8.04 ± 1.061
10.513ThrVal: 10.513 ± 1.372
0.618ThrTrp: 0.618 ± 0.409
3.092ThrTyr: 3.092 ± 1.144
0.0ThrXaa: 0.0 ± 0.0
Val
11.75ValAla: 11.75 ± 0.202
0.618ValCys: 0.618 ± 0.388
2.474ValAsp: 2.474 ± 0.839
4.947ValGlu: 4.947 ± 0.714
3.092ValPhe: 3.092 ± 2.045
6.803ValGly: 6.803 ± 0.285
0.0ValHis: 0.0 ± 0.0
1.855ValIle: 1.855 ± 1.165
2.474ValLys: 2.474 ± 0.756
4.947ValLeu: 4.947 ± 0.88
0.618ValMet: 0.618 ± 0.388
3.092ValAsn: 3.092 ± 0.347
4.947ValPro: 4.947 ± 0.88
0.618ValGln: 0.618 ± 0.388
3.092ValArg: 3.092 ± 1.144
6.184ValSer: 6.184 ± 0.694
3.092ValThr: 3.092 ± 1.247
3.092ValVal: 3.092 ± 0.45
0.0ValTrp: 0.0 ± 0.0
1.855ValTyr: 1.855 ± 1.165
0.0ValXaa: 0.0 ± 0.0
Trp
1.237TrpAla: 1.237 ± 0.776
0.0TrpCys: 0.0 ± 0.0
1.237TrpAsp: 1.237 ± 0.021
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
1.237TrpGly: 1.237 ± 0.776
0.0TrpHis: 0.0 ± 0.0
0.618TrpIle: 0.618 ± 0.409
0.0TrpLys: 0.0 ± 0.0
1.855TrpLeu: 1.855 ± 1.165
0.0TrpMet: 0.0 ± 0.0
0.618TrpAsn: 0.618 ± 0.388
0.0TrpPro: 0.0 ± 0.0
1.237TrpGln: 1.237 ± 0.021
1.237TrpArg: 1.237 ± 0.021
0.618TrpSer: 0.618 ± 0.388
0.0TrpThr: 0.0 ± 0.0
1.237TrpVal: 1.237 ± 0.021
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.947TyrAla: 4.947 ± 0.083
0.618TyrCys: 0.618 ± 0.388
0.618TyrAsp: 0.618 ± 0.388
1.237TyrGlu: 1.237 ± 0.818
1.237TyrPhe: 1.237 ± 0.021
4.947TyrGly: 4.947 ± 0.083
0.0TyrHis: 0.0 ± 0.0
0.618TyrIle: 0.618 ± 0.388
0.0TyrLys: 0.0 ± 0.0
4.947TyrLeu: 4.947 ± 2.309
0.618TyrMet: 0.618 ± 0.409
0.0TyrAsn: 0.0 ± 0.0
1.855TyrPro: 1.855 ± 1.165
0.618TyrGln: 0.618 ± 0.409
3.711TyrArg: 3.711 ± 0.859
1.855TyrSer: 1.855 ± 0.368
1.237TyrThr: 1.237 ± 0.776
0.618TyrVal: 0.618 ± 0.388
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1618 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski