Fulvimarina pelagi HTCC2506

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Fulvimarina; Fulvimarina pelagi

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3739 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q0G5I4|Q0G5I4_9RHIZ Proline-rich region:ATP/GTP-binding site motif A (P-loop) OS=Fulvimarina pelagi HTCC2506 OX=314231 GN=FP2506_09561 PE=4 SV=1
MM1 pKa = 7.68KK2 pKa = 10.59KK3 pKa = 8.95LTLSALASVALLAAPALAQDD23 pKa = 4.51DD24 pKa = 4.07QTSAEE29 pKa = 4.18TTAAASEE36 pKa = 4.22DD37 pKa = 3.94TAGGDD42 pKa = 3.64MQPMEE47 pKa = 4.55VTMNAPDD54 pKa = 3.93GSDD57 pKa = 2.99RR58 pKa = 11.84GTVTVTPTPNGLLLEE73 pKa = 4.67AEE75 pKa = 4.42LTGLEE80 pKa = 4.17PGEE83 pKa = 4.53HH84 pKa = 6.62GFHH87 pKa = 6.39IHH89 pKa = 5.81EE90 pKa = 4.73TGQCGEE96 pKa = 4.71DD97 pKa = 4.16FSAAGGHH104 pKa = 5.68YY105 pKa = 10.39NPTDD109 pKa = 3.52MEE111 pKa = 4.58HH112 pKa = 8.29GYY114 pKa = 7.81MTEE117 pKa = 4.61GGPHH121 pKa = 6.83AGDD124 pKa = 3.56MPNFTAGEE132 pKa = 4.34DD133 pKa = 3.88GSATFAVFNPNLTVSDD149 pKa = 3.47GDD151 pKa = 4.06APVMDD156 pKa = 5.94DD157 pKa = 4.34DD158 pKa = 5.15GSAIMVHH165 pKa = 6.45GGADD169 pKa = 3.61DD170 pKa = 4.75YY171 pKa = 11.58EE172 pKa = 4.39SQPAGDD178 pKa = 3.72AGDD181 pKa = 4.07RR182 pKa = 11.84VACGVIGGAEE192 pKa = 3.68

Molecular weight: 19.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q0G1A7|Q0G1A7_9RHIZ Uncharacterized protein OS=Fulvimarina pelagi HTCC2506 OX=314231 GN=FP2506_12944 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.29VIASRR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.32GRR39 pKa = 11.84KK40 pKa = 8.78RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3739

0

3739

1100244

20

2839

294.3

32.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.667 ± 0.047

0.809 ± 0.013

6.036 ± 0.038

6.649 ± 0.04

3.95 ± 0.032

8.586 ± 0.042

1.881 ± 0.018

5.493 ± 0.029

3.405 ± 0.036

9.601 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.517 ± 0.02

2.691 ± 0.023

4.876 ± 0.031

2.854 ± 0.027

7.008 ± 0.042

5.888 ± 0.04

5.467 ± 0.027

7.229 ± 0.033

1.196 ± 0.016

2.195 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski