Fulvimarina endophytica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Fulvimarina

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3833 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A371X1R6|A0A371X1R6_9RHIZ Uncharacterized protein OS=Fulvimarina endophytica OX=2293836 GN=DYI37_13440 PE=4 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84LNLTASLAAIVLAGAMPAAAQDD24 pKa = 3.58VYY26 pKa = 11.58APYY29 pKa = 9.88EE30 pKa = 4.22PNPAPPVAAAYY41 pKa = 9.99DD42 pKa = 3.72YY43 pKa = 11.61GDD45 pKa = 3.31TDD47 pKa = 4.25FVFEE51 pKa = 4.79LGIGVAAQPDD61 pKa = 4.19YY62 pKa = 11.24LGSDD66 pKa = 3.33NYY68 pKa = 9.64MASIYY73 pKa = 10.76GFGSVEE79 pKa = 3.93YY80 pKa = 10.93LNIPGLGAFGGRR92 pKa = 11.84DD93 pKa = 3.29GRR95 pKa = 11.84GFSIGPSFNYY105 pKa = 10.06VGEE108 pKa = 4.21RR109 pKa = 11.84DD110 pKa = 3.97SNDD113 pKa = 3.07LAGIDD118 pKa = 4.33GVDD121 pKa = 3.09ATYY124 pKa = 11.08EE125 pKa = 3.88LGLRR129 pKa = 11.84AGYY132 pKa = 9.65EE133 pKa = 3.64WDD135 pKa = 3.35NAEE138 pKa = 3.96VYY140 pKa = 10.34GALRR144 pKa = 11.84YY145 pKa = 10.07GLGGAEE151 pKa = 4.57GLTGDD156 pKa = 4.41IGANLIARR164 pKa = 11.84PTDD167 pKa = 3.41RR168 pKa = 11.84LRR170 pKa = 11.84LKK172 pKa = 10.18AGPVATFADD181 pKa = 3.7ADD183 pKa = 3.91YY184 pKa = 10.89NDD186 pKa = 4.91AYY188 pKa = 10.92FSVSPRR194 pKa = 11.84EE195 pKa = 4.05FVNSGGRR202 pKa = 11.84FAAYY206 pKa = 9.77DD207 pKa = 3.26AGGGFNSVGIHH218 pKa = 5.69GEE220 pKa = 3.44ARR222 pKa = 11.84YY223 pKa = 9.76EE224 pKa = 3.82IFTDD228 pKa = 3.64YY229 pKa = 10.62FVNLDD234 pKa = 3.68ASWNRR239 pKa = 11.84LVGDD243 pKa = 4.67AGDD246 pKa = 3.92SPIVKK251 pKa = 9.96VAGDD255 pKa = 3.64DD256 pKa = 3.48DD257 pKa = 3.89QYY259 pKa = 11.69YY260 pKa = 10.34IGLGVSKK267 pKa = 10.56RR268 pKa = 11.84FSLDD272 pKa = 3.03LFF274 pKa = 4.45

Molecular weight: 29.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A371WYS9|A0A371WYS9_9RHIZ TVP38/TMEM64 family membrane protein OS=Fulvimarina endophytica OX=2293836 GN=DYI37_17905 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVGGRR28 pKa = 11.84RR29 pKa = 11.84VIASRR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.32GRR39 pKa = 11.84KK40 pKa = 8.78RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3833

0

3833

1255505

17

6238

327.6

35.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.371 ± 0.056

0.78 ± 0.012

6.016 ± 0.038

6.393 ± 0.045

3.809 ± 0.03

8.902 ± 0.049

1.865 ± 0.019

5.233 ± 0.029

2.995 ± 0.032

9.829 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.419 ± 0.02

2.465 ± 0.024

4.972 ± 0.035

2.772 ± 0.024

7.413 ± 0.049

5.869 ± 0.036

5.358 ± 0.034

7.266 ± 0.033

1.166 ± 0.014

2.106 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski