Amino acid dipepetide frequency for Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	7.105AlaAla: 7.105 ± 0.048	0.921AlaCys: 0.921 ± 0.014	3.582AlaAsp: 3.582 ± 0.029	4.776AlaGlu: 4.776 ± 0.038	2.91AlaPhe: 2.91 ± 0.028	5.093AlaGly: 5.093 ± 0.036	1.525AlaHis: 1.525 ± 0.019	4.326AlaIle: 4.326 ± 0.03	4.307AlaLys: 4.307 ± 0.033	6.738AlaLeu: 6.738 ± 0.041	1.85AlaMet: 1.85 ± 0.02	3.003AlaAsn: 3.003 ± 0.03	4.112AlaPro: 4.112 ± 0.047	3.038AlaGln: 3.038 ± 0.031	4.127AlaArg: 4.127 ± 0.031	6.709AlaSer: 6.709 ± 0.045	4.796AlaThr: 4.796 ± 0.036	4.389AlaVal: 4.389 ± 0.028	0.971AlaTrp: 0.971 ± 0.014	1.99AlaTyr: 1.99 ± 0.019	0.0AlaXaa: 0.0 ± 0.0
Cys	0.845CysAla: 0.845 ± 0.014	0.257CysCys: 0.257 ± 0.009	0.634CysAsp: 0.634 ± 0.012	0.647CysGlu: 0.647 ± 0.013	0.504CysPhe: 0.504 ± 0.01	1.0CysGly: 1.0 ± 0.018	0.289CysHis: 0.289 ± 0.008	0.738CysIle: 0.738 ± 0.014	0.611CysLys: 0.611 ± 0.012	1.143CysLeu: 1.143 ± 0.014	0.283CysMet: 0.283 ± 0.008	0.456CysAsn: 0.456 ± 0.009	0.625CysPro: 0.625 ± 0.011	0.431CysGln: 0.431 ± 0.011	0.661CysArg: 0.661 ± 0.012	0.934CysSer: 0.934 ± 0.014	0.715CysThr: 0.715 ± 0.012	0.744CysVal: 0.744 ± 0.012	0.186CysTrp: 0.186 ± 0.006	0.35CysTyr: 0.35 ± 0.008	0.0CysXaa: 0.0 ± 0.0
Asp	3.98AspAla: 3.98 ± 0.027	0.614AspCys: 0.614 ± 0.011	4.068AspAsp: 4.068 ± 0.039	4.699AspGlu: 4.699 ± 0.042	2.279AspPhe: 2.279 ± 0.02	4.008AspGly: 4.008 ± 0.029	1.145AspHis: 1.145 ± 0.015	3.421AspIle: 3.421 ± 0.023	2.47AspLys: 2.47 ± 0.024	4.836AspLeu: 4.836 ± 0.032	1.326AspMet: 1.326 ± 0.017	2.076AspAsn: 2.076 ± 0.023	2.917AspPro: 2.917 ± 0.028	1.716AspGln: 1.716 ± 0.021	2.772AspArg: 2.772 ± 0.03	4.186AspSer: 4.186 ± 0.035	2.907AspThr: 2.907 ± 0.027	3.422AspVal: 3.422 ± 0.027	0.818AspTrp: 0.818 ± 0.015	1.578AspTyr: 1.578 ± 0.019	0.0AspXaa: 0.0 ± 0.0
Glu	5.091GluAla: 5.091 ± 0.04	0.65GluCys: 0.65 ± 0.012	4.487GluAsp: 4.487 ± 0.047	6.471GluGlu: 6.471 ± 0.057	2.101GluPhe: 2.101 ± 0.022	4.226GluGly: 4.226 ± 0.037	1.3GluHis: 1.3 ± 0.017	3.762GluIle: 3.762 ± 0.03	4.648GluLys: 4.648 ± 0.045	5.199GluLeu: 5.199 ± 0.037	1.692GluMet: 1.692 ± 0.021	2.971GluAsn: 2.971 ± 0.025	2.553GluPro: 2.553 ± 0.033	2.317GluGln: 2.317 ± 0.027	4.17GluArg: 4.17 ± 0.044	4.71GluSer: 4.71 ± 0.04	3.527GluThr: 3.527 ± 0.028	3.887GluVal: 3.887 ± 0.032	0.987GluTrp: 0.987 ± 0.016	1.814GluTyr: 1.814 ± 0.019	0.0GluXaa: 0.0 ± 0.0
Phe	2.734PheAla: 2.734 ± 0.026	0.556PheCys: 0.556 ± 0.011	2.303PheAsp: 2.303 ± 0.021	2.362PheGlu: 2.362 ± 0.022	1.507PhePhe: 1.507 ± 0.023	2.814PheGly: 2.814 ± 0.029	0.882PheHis: 0.882 ± 0.012	1.964PheIle: 1.964 ± 0.023	1.799PheLys: 1.799 ± 0.019	3.306PheLeu: 3.306 ± 0.033	0.867PheMet: 0.867 ± 0.012	1.638PheAsn: 1.638 ± 0.018	1.911PhePro: 1.911 ± 0.02	1.43PheGln: 1.43 ± 0.016	1.857PheArg: 1.857 ± 0.02	3.079PheSer: 3.079 ± 0.024	2.202PheThr: 2.202 ± 0.021	2.205PheVal: 2.205 ± 0.026	0.601PheTrp: 0.601 ± 0.011	1.11PheTyr: 1.11 ± 0.016	0.0PheXaa: 0.0 ± 0.0
Gly	4.677GlyAla: 4.677 ± 0.035	0.853GlyCys: 0.853 ± 0.016	3.529GlyAsp: 3.529 ± 0.028	4.054GlyGlu: 4.054 ± 0.03	2.842GlyPhe: 2.842 ± 0.031	5.921GlyGly: 5.921 ± 0.06	1.573GlyHis: 1.573 ± 0.021	3.857GlyIle: 3.857 ± 0.031	4.15GlyLys: 4.15 ± 0.036	5.636GlyLeu: 5.636 ± 0.038	1.777GlyMet: 1.777 ± 0.023	3.05GlyAsn: 3.05 ± 0.031	2.832GlyPro: 2.832 ± 0.031	2.292GlyGln: 2.292 ± 0.024	3.948GlyArg: 3.948 ± 0.037	5.723GlySer: 5.723 ± 0.049	3.94GlyThr: 3.94 ± 0.028	4.242GlyVal: 4.242 ± 0.033	1.137GlyTrp: 1.137 ± 0.016	2.14GlyTyr: 2.14 ± 0.023	0.0GlyXaa: 0.0 ± 0.0
His	1.512HisAla: 1.512 ± 0.021	0.318HisCys: 0.318 ± 0.007	1.206HisAsp: 1.206 ± 0.017	1.345HisGlu: 1.345 ± 0.016	0.924HisPhe: 0.924 ± 0.015	1.54HisGly: 1.54 ± 0.018	0.769HisHis: 0.769 ± 0.015	1.266HisIle: 1.266 ± 0.017	1.068HisLys: 1.068 ± 0.014	2.071HisLeu: 2.071 ± 0.022	0.467HisMet: 0.467 ± 0.01	0.979HisAsn: 0.979 ± 0.013	1.508HisPro: 1.508 ± 0.017	0.975HisGln: 0.975 ± 0.015	1.338HisArg: 1.338 ± 0.017	1.84HisSer: 1.84 ± 0.021	1.342HisThr: 1.342 ± 0.018	1.242HisVal: 1.242 ± 0.016	0.301HisTrp: 0.301 ± 0.008	0.672HisTyr: 0.672 ± 0.011	0.0HisXaa: 0.0 ± 0.0
Ile	4.204IleAla: 4.204 ± 0.033	0.867IleCys: 0.867 ± 0.014	3.12IleAsp: 3.12 ± 0.027	3.483IleGlu: 3.483 ± 0.026	2.229IlePhe: 2.229 ± 0.023	3.404IleGly: 3.404 ± 0.029	1.337IleHis: 1.337 ± 0.016	3.178IleIle: 3.178 ± 0.034	2.882IleLys: 2.882 ± 0.027	5.108IleLeu: 5.108 ± 0.04	1.18IleMet: 1.18 ± 0.016	2.29IleAsn: 2.29 ± 0.022	3.529IlePro: 3.529 ± 0.028	2.186IleGln: 2.186 ± 0.021	2.976IleArg: 2.976 ± 0.025	4.8IleSer: 4.8 ± 0.037	3.335IleThr: 3.335 ± 0.03	3.241IleVal: 3.241 ± 0.03	0.767IleTrp: 0.767 ± 0.012	1.639IleTyr: 1.639 ± 0.019	0.0IleXaa: 0.0 ± 0.0
Lys	4.515LysAla: 4.515 ± 0.034	0.612LysCys: 0.612 ± 0.011	3.223LysAsp: 3.223 ± 0.029	4.356LysGlu: 4.356 ± 0.042	1.735LysPhe: 1.735 ± 0.019	3.492LysGly: 3.492 ± 0.03	1.206LysHis: 1.206 ± 0.016	3.065LysIle: 3.065 ± 0.026	4.304LysLys: 4.304 ± 0.046	4.543LysLeu: 4.543 ± 0.033	1.267LysMet: 1.267 ± 0.016	2.329LysAsn: 2.329 ± 0.02	2.916LysPro: 2.916 ± 0.031	1.955LysGln: 1.955 ± 0.022	3.813LysArg: 3.813 ± 0.032	4.363LysSer: 4.363 ± 0.032	3.278LysThr: 3.278 ± 0.028	3.269LysVal: 3.269 ± 0.022	0.784LysTrp: 0.784 ± 0.013	1.63LysTyr: 1.63 ± 0.02	0.0LysXaa: 0.0 ± 0.0
Leu	6.726LeuAla: 6.726 ± 0.045	1.133LeuCys: 1.133 ± 0.015	4.849LeuAsp: 4.849 ± 0.032	5.709LeuGlu: 5.709 ± 0.044	3.088LeuPhe: 3.088 ± 0.029	5.6LeuGly: 5.6 ± 0.036	2.029LeuHis: 2.029 ± 0.022	4.215LeuIle: 4.215 ± 0.032	4.792LeuLys: 4.792 ± 0.034	7.632LeuLeu: 7.632 ± 0.052	1.801LeuMet: 1.801 ± 0.017	3.494LeuAsn: 3.494 ± 0.029	5.126LeuPro: 5.126 ± 0.036	3.56LeuGln: 3.56 ± 0.033	5.113LeuArg: 5.113 ± 0.037	7.182LeuSer: 7.182 ± 0.044	4.68LeuThr: 4.68 ± 0.035	4.78LeuVal: 4.78 ± 0.036	1.12LeuTrp: 1.12 ± 0.017	2.26LeuTyr: 2.26 ± 0.024	0.0LeuXaa: 0.0 ± 0.0
Met	2.125MetAla: 2.125 ± 0.022	0.263MetCys: 0.263 ± 0.007	1.378MetAsp: 1.378 ± 0.016	1.553MetGlu: 1.553 ± 0.02	0.76MetPhe: 0.76 ± 0.012	1.623MetGly: 1.623 ± 0.018	0.505MetHis: 0.505 ± 0.01	1.173MetIle: 1.173 ± 0.016	1.248MetLys: 1.248 ± 0.017	1.752MetLeu: 1.752 ± 0.021	0.635MetMet: 0.635 ± 0.012	0.958MetAsn: 0.958 ± 0.016	1.19MetPro: 1.19 ± 0.017	0.866MetGln: 0.866 ± 0.016	1.269MetArg: 1.269 ± 0.015	2.031MetSer: 2.031 ± 0.021	1.347MetThr: 1.347 ± 0.017	1.359MetVal: 1.359 ± 0.015	0.255MetTrp: 0.255 ± 0.007	0.561MetTyr: 0.561 ± 0.013	0.0MetXaa: 0.0 ± 0.0
Asn	3.203AsnAla: 3.203 ± 0.028	0.496AsnCys: 0.496 ± 0.01	2.209AsnAsp: 2.209 ± 0.02	2.524AsnGlu: 2.524 ± 0.023	1.675AsnPhe: 1.675 ± 0.017	3.444AsnGly: 3.444 ± 0.032	1.034AsnHis: 1.034 ± 0.015	2.623AsnIle: 2.623 ± 0.026	1.989AsnLys: 1.989 ± 0.023	3.662AsnLeu: 3.662 ± 0.031	0.97AsnMet: 0.97 ± 0.013	1.999AsnAsn: 1.999 ± 0.035	2.603AsnPro: 2.603 ± 0.022	1.579AsnGln: 1.579 ± 0.021	2.134AsnArg: 2.134 ± 0.02	3.547AsnSer: 3.547 ± 0.033	2.68AsnThr: 2.68 ± 0.026	2.435AsnVal: 2.435 ± 0.024	0.619AsnTrp: 0.619 ± 0.012	1.254AsnTyr: 1.254 ± 0.02	0.0AsnXaa: 0.0 ± 0.0
Pro	4.275ProAla: 4.275 ± 0.041	0.472ProCys: 0.472 ± 0.01	2.685ProAsp: 2.685 ± 0.026	3.56ProGlu: 3.56 ± 0.031	1.97ProPhe: 1.97 ± 0.022	3.407ProGly: 3.407 ± 0.031	1.234ProHis: 1.234 ± 0.019	2.96ProIle: 2.96 ± 0.024	2.972ProLys: 2.972 ± 0.032	4.416ProLeu: 4.416 ± 0.031	1.051ProMet: 1.051 ± 0.015	2.4ProAsn: 2.4 ± 0.024	4.564ProPro: 4.564 ± 0.057	2.368ProGln: 2.368 ± 0.028	3.076ProArg: 3.076 ± 0.03	5.856ProSer: 5.856 ± 0.051	3.995ProThr: 3.995 ± 0.032	3.105ProVal: 3.105 ± 0.032	0.658ProTrp: 0.658 ± 0.013	1.462ProTyr: 1.462 ± 0.017	0.0ProXaa: 0.0 ± 0.0
Gln	3.065GlnAla: 3.065 ± 0.031	0.397GlnCys: 0.397 ± 0.01	1.907GlnAsp: 1.907 ± 0.019	2.472GlnGlu: 2.472 ± 0.025	1.272GlnPhe: 1.272 ± 0.017	2.26GlnGly: 2.26 ± 0.02	0.956GlnHis: 0.956 ± 0.014	2.181GlnIle: 2.181 ± 0.022	2.288GlnLys: 2.288 ± 0.023	3.121GlnLeu: 3.121 ± 0.03	0.893GlnMet: 0.893 ± 0.014	1.896GlnAsn: 1.896 ± 0.022	2.148GlnPro: 2.148 ± 0.029	2.168GlnGln: 2.168 ± 0.042	2.384GlnArg: 2.384 ± 0.025	3.179GlnSer: 3.179 ± 0.031	2.27GlnThr: 2.27 ± 0.024	1.974GlnVal: 1.974 ± 0.016	0.506GlnTrp: 0.506 ± 0.011	1.205GlnTyr: 1.205 ± 0.016	0.0GlnXaa: 0.0 ± 0.0
Arg	4.044ArgAla: 4.044 ± 0.033	0.655ArgCys: 0.655 ± 0.013	3.097ArgAsp: 3.097 ± 0.03	4.032ArgGlu: 4.032 ± 0.039	1.959ArgPhe: 1.959 ± 0.021	3.757ArgGly: 3.757 ± 0.038	1.316ArgHis: 1.316 ± 0.017	3.081ArgIle: 3.081 ± 0.026	3.924ArgLys: 3.924 ± 0.032	4.809ArgLeu: 4.809 ± 0.038	1.38ArgMet: 1.38 ± 0.018	2.504ArgAsn: 2.504 ± 0.024	2.896ArgPro: 2.896 ± 0.03	2.301ArgGln: 2.301 ± 0.023	4.568ArgArg: 4.568 ± 0.039	4.642ArgSer: 4.642 ± 0.037	3.088ArgThr: 3.088 ± 0.025	3.062ArgVal: 3.062 ± 0.025	0.818ArgTrp: 0.818 ± 0.013	1.586ArgTyr: 1.586 ± 0.021	0.0ArgXaa: 0.0 ± 0.0
Ser	6.101SerAla: 6.101 ± 0.046	0.907SerCys: 0.907 ± 0.016	4.268SerAsp: 4.268 ± 0.036	4.537SerGlu: 4.537 ± 0.039	3.161SerPhe: 3.161 ± 0.026	5.583SerGly: 5.583 ± 0.041	1.992SerHis: 1.992 ± 0.022	4.824SerIle: 4.824 ± 0.032	4.669SerLys: 4.669 ± 0.035	7.009SerLeu: 7.009 ± 0.046	1.86SerMet: 1.86 ± 0.02	3.848SerAsn: 3.848 ± 0.032	5.51SerPro: 5.51 ± 0.056	3.371SerGln: 3.371 ± 0.028	4.833SerArg: 4.833 ± 0.04	9.845SerSer: 9.845 ± 0.085	6.296SerThr: 6.296 ± 0.055	4.387SerVal: 4.387 ± 0.032	1.031SerTrp: 1.031 ± 0.014	2.26SerTyr: 2.26 ± 0.023	0.0SerXaa: 0.0 ± 0.0
Thr	4.621ThrAla: 4.621 ± 0.029	0.742ThrCys: 0.742 ± 0.011	2.7ThrAsp: 2.7 ± 0.024	3.267ThrGlu: 3.267 ± 0.027	2.318ThrPhe: 2.318 ± 0.023	4.075ThrGly: 4.075 ± 0.035	1.3ThrHis: 1.3 ± 0.016	3.62ThrIle: 3.62 ± 0.03	3.137ThrLys: 3.137 ± 0.031	5.148ThrLeu: 5.148 ± 0.034	1.207ThrMet: 1.207 ± 0.015	2.57ThrAsn: 2.57 ± 0.025	4.407ThrPro: 4.407 ± 0.04	2.175ThrGln: 2.175 ± 0.025	3.004ThrArg: 3.004 ± 0.028	6.168ThrSer: 6.168 ± 0.053	4.602ThrThr: 4.602 ± 0.051	3.322ThrVal: 3.322 ± 0.026	0.785ThrTrp: 0.785 ± 0.013	1.691ThrTyr: 1.691 ± 0.02	0.0ThrXaa: 0.0 ± 0.0
Val	4.487ValAla: 4.487 ± 0.035	0.705ValCys: 0.705 ± 0.012	3.491ValAsp: 3.491 ± 0.029	4.147ValGlu: 4.147 ± 0.034	2.189ValPhe: 2.189 ± 0.025	3.904ValGly: 3.904 ± 0.037	1.233ValHis: 1.233 ± 0.016	3.056ValIle: 3.056 ± 0.028	3.189ValLys: 3.189 ± 0.028	4.977ValLeu: 4.977 ± 0.036	1.332ValMet: 1.332 ± 0.017	2.239ValAsn: 2.239 ± 0.021	3.162ValPro: 3.162 ± 0.028	2.183ValGln: 2.183 ± 0.021	3.081ValArg: 3.081 ± 0.025	4.346ValSer: 4.346 ± 0.028	3.261ValThr: 3.261 ± 0.027	3.981ValVal: 3.981 ± 0.037	0.775ValTrp: 0.775 ± 0.012	1.621ValTyr: 1.621 ± 0.018	0.0ValXaa: 0.0 ± 0.0
Trp	0.963TrpAla: 0.963 ± 0.014	0.191TrpCys: 0.191 ± 0.006	0.849TrpAsp: 0.849 ± 0.013	0.89TrpGlu: 0.89 ± 0.014	0.521TrpPhe: 0.521 ± 0.01	0.918TrpGly: 0.918 ± 0.015	0.319TrpHis: 0.319 ± 0.008	0.825TrpIle: 0.825 ± 0.014	0.886TrpLys: 0.886 ± 0.014	1.222TrpLeu: 1.222 ± 0.018	0.383TrpMet: 0.383 ± 0.009	0.652TrpAsn: 0.652 ± 0.012	0.507TrpPro: 0.507 ± 0.01	0.493TrpGln: 0.493 ± 0.01	0.842TrpArg: 0.842 ± 0.015	0.984TrpSer: 0.984 ± 0.015	0.852TrpThr: 0.852 ± 0.013	0.816TrpVal: 0.816 ± 0.013	0.275TrpTrp: 0.275 ± 0.008	0.424TrpTyr: 0.424 ± 0.009	0.0TrpXaa: 0.0 ± 0.0
Tyr	1.997TyrAla: 1.997 ± 0.021	0.442TyrCys: 0.442 ± 0.01	1.654TyrAsp: 1.654 ± 0.019	1.679TyrGlu: 1.679 ± 0.018	1.184TyrPhe: 1.184 ± 0.014	2.103TyrGly: 2.103 ± 0.025	0.739TyrHis: 0.739 ± 0.013	1.619TyrIle: 1.619 ± 0.02	1.321TyrLys: 1.321 ± 0.019	2.56TyrLeu: 2.56 ± 0.028	0.63TyrMet: 0.63 ± 0.012	1.329TyrAsn: 1.329 ± 0.018	1.47TyrPro: 1.47 ± 0.017	1.139TyrGln: 1.139 ± 0.016	1.55TyrArg: 1.55 ± 0.017	2.166TyrSer: 2.166 ± 0.023	1.745TyrThr: 1.745 ± 0.017	1.501TyrVal: 1.501 ± 0.019	0.418TyrTrp: 0.418 ± 0.01	0.947TyrTyr: 0.947 ± 0.016	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 14445 proteins (5243077 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

---