Felis catus gammaherpesvirus 1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Percavirus; Felid gammaherpesvirus 1

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 87 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M3T960|A0A0M3T960_9GAMA DNA polymerase OS=Felis catus gammaherpesvirus 1 OX=1452540 PE=3 SV=1
MM1 pKa = 7.44NSKK4 pKa = 8.78CTEE7 pKa = 3.61IVLVFLEE14 pKa = 4.9LNNPSYY20 pKa = 10.83PVTVLINITLSFPGLHH36 pKa = 6.77LYY38 pKa = 9.92IEE40 pKa = 4.31NSGLYY45 pKa = 8.56KK46 pKa = 9.53TVCKK50 pKa = 10.37NLEE53 pKa = 4.29FIRR56 pKa = 11.84GLLAMAYY63 pKa = 9.55YY64 pKa = 10.04GRR66 pKa = 11.84SVQTANSTCIPVEE79 pKa = 4.34TTWPPEE85 pKa = 3.6EE86 pKa = 4.48DD87 pKa = 3.6TPNGPEE93 pKa = 3.89EE94 pKa = 5.18DD95 pKa = 3.34EE96 pKa = 4.24WPYY99 pKa = 11.72GDD101 pKa = 4.55IIGGGDD107 pKa = 3.44VDD109 pKa = 4.8SGGLINQPVEE119 pKa = 4.53DD120 pKa = 4.62EE121 pKa = 4.18WPKK124 pKa = 10.76PLDD127 pKa = 3.39AVGPNQPEE135 pKa = 3.98EE136 pKa = 4.44SDD138 pKa = 3.38WPGDD142 pKa = 3.57LTT144 pKa = 4.82

Molecular weight: 15.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M4MD83|A0A0M4MD83_9GAMA F7 OS=Felis catus gammaherpesvirus 1 OX=1452540 PE=4 SV=1
MM1 pKa = 7.45IAGASIWLHH10 pKa = 4.98VLLINILGKK19 pKa = 8.14TVHH22 pKa = 6.6ASSSVITSSEE32 pKa = 3.94TTKK35 pKa = 10.84AVPTTVTVTSVTSGLGSSLTSQNHH59 pKa = 3.84QTNTVTTVNFNSQLLKK75 pKa = 10.3STDD78 pKa = 3.45LVMVMLLVTIAGLFLLIMSGVIITDD103 pKa = 3.77CYY105 pKa = 9.89KK106 pKa = 10.5NRR108 pKa = 11.84NRR110 pKa = 11.84RR111 pKa = 11.84YY112 pKa = 9.74QRR114 pKa = 11.84VPLIPLRR121 pKa = 11.84NYY123 pKa = 8.62PNQRR127 pKa = 11.84NRR129 pKa = 11.84MWGNN133 pKa = 2.98

Molecular weight: 14.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

87

0

87

36473

55

2259

419.2

47.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.68 ± 0.156

2.506 ± 0.15

4.401 ± 0.176

5.045 ± 0.234

5.113 ± 0.179

4.59 ± 0.263

2.72 ± 0.094

7.241 ± 0.271

6.27 ± 0.237

10.276 ± 0.268

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.196 ± 0.102

5.711 ± 0.199

5.168 ± 0.356

4.532 ± 0.159

3.356 ± 0.19

8.283 ± 0.207

7.002 ± 0.243

5.854 ± 0.192

1.195 ± 0.111

3.86 ± 0.15
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski