Marinirhabdus gelatinilytica

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Marinirhabdus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3022 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A370QGB2|A0A370QGB2_9FLAO Phosphate starvation-inducible protein PhoH OS=Marinirhabdus gelatinilytica OX=1703343 GN=C8D94_102583 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 10.4KK3 pKa = 9.77ILLTVLGTLALFSCSKK19 pKa = 10.49DD20 pKa = 3.55SEE22 pKa = 4.66VLTTTSQDD30 pKa = 3.3LTVEE34 pKa = 4.55LAQEE38 pKa = 4.2EE39 pKa = 4.67KK40 pKa = 10.78SVFGTYY46 pKa = 10.17KK47 pKa = 11.02GIFTTNNAEE56 pKa = 3.93YY57 pKa = 10.44RR58 pKa = 11.84GTFEE62 pKa = 4.68LWVPSSNSSSYY73 pKa = 10.76SISAYY78 pKa = 9.81RR79 pKa = 11.84VPTVKK84 pKa = 9.7LTLHH88 pKa = 5.74TGEE91 pKa = 4.89VYY93 pKa = 10.79FSQAEE98 pKa = 4.26SNPVGGRR105 pKa = 11.84ALSNLEE111 pKa = 3.96FVSDD115 pKa = 4.08DD116 pKa = 3.44FTFSFSVNEE125 pKa = 4.62DD126 pKa = 2.94GSNPTVTNVTFKK138 pKa = 10.85NAEE141 pKa = 3.74GDD143 pKa = 3.61MLLAKK148 pKa = 8.89HH149 pKa = 5.37TQRR152 pKa = 11.84APVNPRR158 pKa = 11.84SGTWDD163 pKa = 3.29CTTCNGHH170 pKa = 6.31PVVGQGGTQTFNMMFVTADD189 pKa = 3.45GNSTITTQSTINSTTTDD206 pKa = 4.13GIGVQSNCMANGDD219 pKa = 4.03TTVCTIEE226 pKa = 4.83SGDD229 pKa = 3.7GTTTTTGFLSNGNPVTWLGTHH250 pKa = 6.26TFNNEE255 pKa = 2.97VSGPDD260 pKa = 3.67DD261 pKa = 4.34CSTLQGTWEE270 pKa = 4.28WEE272 pKa = 4.27SISYY276 pKa = 7.71GTLEE280 pKa = 4.45GNFITDD286 pKa = 2.99IAGNCPITDD295 pKa = 3.22VTLINEE301 pKa = 4.44DD302 pKa = 3.94FEE304 pKa = 5.05DD305 pKa = 3.7ATVSYY310 pKa = 10.57VASFDD315 pKa = 4.1DD316 pKa = 5.37LSGEE320 pKa = 3.73NDD322 pKa = 3.52DD323 pKa = 4.92YY324 pKa = 11.74FRR326 pKa = 11.84ITNGTDD332 pKa = 2.73ISATINNVQGSQFFAAQDD350 pKa = 3.56TDD352 pKa = 3.78GVAGNGQSPANLTWSNLNITGLTNINFSAFFAEE385 pKa = 5.45DD386 pKa = 3.79DD387 pKa = 4.12ASDD390 pKa = 4.94AAEE393 pKa = 4.53DD394 pKa = 3.46WDD396 pKa = 3.85NADD399 pKa = 4.36FVDD402 pKa = 3.83VQYY405 pKa = 11.6SFDD408 pKa = 3.43GTTYY412 pKa = 8.02TTFFSIRR419 pKa = 11.84NDD421 pKa = 2.81GSTFNAAPQIDD432 pKa = 4.1TDD434 pKa = 4.32LDD436 pKa = 4.12GVGDD440 pKa = 3.9GAIITDD446 pKa = 3.3NMANYY451 pKa = 9.79SASFPINGTTNPTASTEE468 pKa = 3.47LWIRR472 pKa = 11.84VNVGLDD478 pKa = 3.27SGDD481 pKa = 3.46EE482 pKa = 4.61DD483 pKa = 4.13IAFDD487 pKa = 4.07DD488 pKa = 5.62FIVIGNN494 pKa = 3.95

Molecular weight: 52.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A370QFD6|A0A370QFD6_9FLAO Uncharacterized protein (DUF58 family) OS=Marinirhabdus gelatinilytica OX=1703343 GN=C8D94_102258 PE=4 SV=1
MM1 pKa = 7.53IKK3 pKa = 10.29FFRR6 pKa = 11.84HH7 pKa = 4.03IRR9 pKa = 11.84QRR11 pKa = 11.84LIRR14 pKa = 11.84EE15 pKa = 4.01NRR17 pKa = 11.84FSKK20 pKa = 10.73YY21 pKa = 10.02LLYY24 pKa = 10.77AIGEE28 pKa = 4.34IILVVIGILIAEE40 pKa = 4.33NLAPSLKK47 pKa = 10.72GGFSKK52 pKa = 11.05DD53 pKa = 3.34PLRR56 pKa = 5.7

Molecular weight: 6.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3022

0

3022

992534

28

2692

328.4

36.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.758 ± 0.034

0.744 ± 0.016

5.588 ± 0.061

6.947 ± 0.043

5.176 ± 0.037

6.671 ± 0.054

1.764 ± 0.022

7.258 ± 0.042

7.243 ± 0.068

9.226 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.192 ± 0.026

5.808 ± 0.041

3.58 ± 0.031

3.633 ± 0.023

3.61 ± 0.032

6.059 ± 0.034

6.245 ± 0.041

6.527 ± 0.031

1.03 ± 0.016

3.941 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski