Amino acid dipepetide frequency for Alces alces faeces associated genomovirus MP111

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.236AlaAla: 3.236 ± 2.208
0.0AlaCys: 0.0 ± 0.0
8.091AlaAsp: 8.091 ± 1.158
3.236AlaGlu: 3.236 ± 2.244
0.0AlaPhe: 0.0 ± 0.0
4.854AlaGly: 4.854 ± 1.14
0.0AlaHis: 0.0 ± 0.0
4.854AlaIle: 4.854 ± 1.14
1.618AlaLys: 1.618 ± 1.122
4.854AlaLeu: 4.854 ± 1.086
0.0AlaMet: 0.0 ± 0.0
9.709AlaAsn: 9.709 ± 4.506
6.472AlaPro: 6.472 ± 2.19
3.236AlaGln: 3.236 ± 0.018
8.091AlaArg: 8.091 ± 1.158
3.236AlaSer: 3.236 ± 2.208
11.327AlaThr: 11.327 ± 3.276
3.236AlaVal: 3.236 ± 2.244
0.0AlaTrp: 0.0 ± 0.0
1.618AlaTyr: 1.618 ± 1.104
0.0AlaXaa: 0.0 ± 0.0
Cys
3.236CysAla: 3.236 ± 2.208
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
1.618CysGlu: 1.618 ± 1.122
1.618CysPhe: 1.618 ± 1.104
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
4.854CysIle: 4.854 ± 3.366
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
1.618CysGln: 1.618 ± 1.122
0.0CysArg: 0.0 ± 0.0
1.618CysSer: 1.618 ± 1.122
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.618CysTyr: 1.618 ± 1.104
0.0CysXaa: 0.0 ± 0.0
Asp
0.0AspAla: 0.0 ± 0.0
0.0AspCys: 0.0 ± 0.0
6.472AspAsp: 6.472 ± 2.262
3.236AspGlu: 3.236 ± 2.244
3.236AspPhe: 3.236 ± 0.018
4.854AspGly: 4.854 ± 3.366
1.618AspHis: 1.618 ± 1.122
6.472AspIle: 6.472 ± 2.262
1.618AspLys: 1.618 ± 1.104
6.472AspLeu: 6.472 ± 4.487
3.236AspMet: 3.236 ± 0.018
1.618AspAsn: 1.618 ± 1.104
6.472AspPro: 6.472 ± 4.487
0.0AspGln: 0.0 ± 0.0
1.618AspArg: 1.618 ± 1.122
1.618AspSer: 1.618 ± 1.104
4.854AspThr: 4.854 ± 3.312
6.472AspVal: 6.472 ± 0.036
4.854AspTrp: 4.854 ± 1.14
3.236AspTyr: 3.236 ± 0.018
0.0AspXaa: 0.0 ± 0.0
Glu
6.472GluAla: 6.472 ± 2.262
1.618GluCys: 1.618 ± 1.122
0.0GluAsp: 0.0 ± 0.0
1.618GluGlu: 1.618 ± 1.122
4.854GluPhe: 4.854 ± 3.366
1.618GluGly: 1.618 ± 1.104
1.618GluHis: 1.618 ± 1.122
1.618GluIle: 1.618 ± 1.122
3.236GluLys: 3.236 ± 2.208
3.236GluLeu: 3.236 ± 2.244
3.236GluMet: 3.236 ± 0.794
1.618GluAsn: 1.618 ± 1.104
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
4.854GluArg: 4.854 ± 3.366
3.236GluSer: 3.236 ± 2.244
1.618GluThr: 1.618 ± 1.104
1.618GluVal: 1.618 ± 1.104
0.0GluTrp: 0.0 ± 0.0
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
6.472PheAla: 6.472 ± 4.487
0.0PheCys: 0.0 ± 0.0
6.472PheAsp: 6.472 ± 4.487
1.618PheGlu: 1.618 ± 1.104
1.618PhePhe: 1.618 ± 1.122
6.472PheGly: 6.472 ± 4.487
3.236PheHis: 3.236 ± 2.244
0.0PheIle: 0.0 ± 0.0
1.618PheLys: 1.618 ± 1.122
3.236PheLeu: 3.236 ± 0.018
3.236PheMet: 3.236 ± 0.018
1.618PheAsn: 1.618 ± 1.122
1.618PhePro: 1.618 ± 1.122
0.0PheGln: 0.0 ± 0.0
6.472PheArg: 6.472 ± 0.036
6.472PheSer: 6.472 ± 0.036
1.618PheThr: 1.618 ± 1.104
3.236PheVal: 3.236 ± 0.018
1.618PheTrp: 1.618 ± 1.104
4.854PheTyr: 4.854 ± 1.14
0.0PheXaa: 0.0 ± 0.0
Gly
9.709GlyAla: 9.709 ± 2.172
1.618GlyCys: 1.618 ± 1.122
4.854GlyAsp: 4.854 ± 1.14
4.854GlyGlu: 4.854 ± 3.366
3.236GlyPhe: 3.236 ± 0.018
14.563GlyGly: 14.563 ± 1.032
0.0GlyHis: 0.0 ± 0.0
6.472GlyIle: 6.472 ± 0.036
4.854GlyLys: 4.854 ± 1.086
4.854GlyLeu: 4.854 ± 1.086
3.236GlyMet: 3.236 ± 2.208
4.854GlyAsn: 4.854 ± 3.312
1.618GlyPro: 1.618 ± 1.122
1.618GlyGln: 1.618 ± 1.122
6.472GlyArg: 6.472 ± 0.036
8.091GlySer: 8.091 ± 3.294
4.854GlyThr: 4.854 ± 1.086
4.854GlyVal: 4.854 ± 1.14
0.0GlyTrp: 0.0 ± 0.0
3.236GlyTyr: 3.236 ± 2.208
0.0GlyXaa: 0.0 ± 0.0
His
1.618HisAla: 1.618 ± 1.122
0.0HisCys: 0.0 ± 0.0
1.618HisAsp: 1.618 ± 1.122
1.618HisGlu: 1.618 ± 1.104
3.236HisPhe: 3.236 ± 2.244
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
3.236HisPro: 3.236 ± 0.018
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
3.236HisVal: 3.236 ± 2.244
0.0HisTrp: 0.0 ± 0.0
1.618HisTyr: 1.618 ± 1.122
0.0HisXaa: 0.0 ± 0.0
Ile
1.618IleAla: 1.618 ± 1.122
1.618IleCys: 1.618 ± 1.104
1.618IleAsp: 1.618 ± 1.104
0.0IleGlu: 0.0 ± 0.0
6.472IlePhe: 6.472 ± 2.262
4.854IleGly: 4.854 ± 3.312
0.0IleHis: 0.0 ± 0.0
0.0IleIle: 0.0 ± 0.0
1.618IleLys: 1.618 ± 1.122
3.236IleLeu: 3.236 ± 0.018
1.618IleMet: 1.618 ± 1.122
1.618IleAsn: 1.618 ± 1.104
1.618IlePro: 1.618 ± 1.104
4.854IleGln: 4.854 ± 1.086
0.0IleArg: 0.0 ± 0.0
4.854IleSer: 4.854 ± 1.086
3.236IleThr: 3.236 ± 0.018
6.472IleVal: 6.472 ± 4.487
1.618IleTrp: 1.618 ± 1.122
1.618IleTyr: 1.618 ± 1.104
0.0IleXaa: 0.0 ± 0.0
Lys
1.618LysAla: 1.618 ± 1.104
0.0LysCys: 0.0 ± 0.0
4.854LysAsp: 4.854 ± 1.14
1.618LysGlu: 1.618 ± 1.104
6.472LysPhe: 6.472 ± 4.487
3.236LysGly: 3.236 ± 2.208
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
4.854LysLys: 4.854 ± 3.312
0.0LysLeu: 0.0 ± 0.0
0.0LysMet: 0.0 ± 0.805
1.618LysAsn: 1.618 ± 1.104
3.236LysPro: 3.236 ± 2.208
1.618LysGln: 1.618 ± 1.122
4.854LysArg: 4.854 ± 3.312
3.236LysSer: 3.236 ± 0.018
3.236LysThr: 3.236 ± 0.018
0.0LysVal: 0.0 ± 0.0
1.618LysTrp: 1.618 ± 1.122
4.854LysTyr: 4.854 ± 1.086
0.0LysXaa: 0.0 ± 0.0
Leu
1.618LeuAla: 1.618 ± 1.122
1.618LeuCys: 1.618 ± 1.122
8.091LeuAsp: 8.091 ± 3.384
3.236LeuGlu: 3.236 ± 2.244
3.236LeuPhe: 3.236 ± 0.018
9.709LeuGly: 9.709 ± 6.731
0.0LeuHis: 0.0 ± 0.0
1.618LeuIle: 1.618 ± 1.122
3.236LeuLys: 3.236 ± 2.208
3.236LeuLeu: 3.236 ± 0.018
1.618LeuMet: 1.618 ± 1.104
3.236LeuAsn: 3.236 ± 2.208
0.0LeuPro: 0.0 ± 0.0
1.618LeuGln: 1.618 ± 1.104
1.618LeuArg: 1.618 ± 1.104
3.236LeuSer: 3.236 ± 0.018
0.0LeuThr: 0.0 ± 0.0
6.472LeuVal: 6.472 ± 0.036
0.0LeuTrp: 0.0 ± 0.0
4.854LeuTyr: 4.854 ± 1.14
0.0LeuXaa: 0.0 ± 0.0
Met
3.236MetAla: 3.236 ± 2.208
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.618MetGlu: 1.618 ± 1.122
1.618MetPhe: 1.618 ± 1.104
1.618MetGly: 1.618 ± 1.104
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.618MetLeu: 1.618 ± 1.104
0.0MetMet: 0.0 ± 0.0
1.618MetAsn: 1.618 ± 1.104
3.236MetPro: 3.236 ± 0.018
1.618MetGln: 1.618 ± 1.104
1.618MetArg: 1.618 ± 1.104
1.618MetSer: 1.618 ± 1.104
3.236MetThr: 3.236 ± 0.018
1.618MetVal: 1.618 ± 1.122
3.236MetTrp: 3.236 ± 0.018
1.618MetTyr: 1.618 ± 1.104
0.0MetXaa: 0.0 ± 0.0
Asn
6.472AsnAla: 6.472 ± 0.036
1.618AsnCys: 1.618 ± 1.122
1.618AsnAsp: 1.618 ± 1.104
0.0AsnGlu: 0.0 ± 0.0
0.0AsnPhe: 0.0 ± 0.0
8.091AsnGly: 8.091 ± 5.519
0.0AsnHis: 0.0 ± 0.0
4.854AsnIle: 4.854 ± 1.086
1.618AsnLys: 1.618 ± 1.104
1.618AsnLeu: 1.618 ± 1.104
1.618AsnMet: 1.618 ± 1.104
1.618AsnAsn: 1.618 ± 1.104
3.236AsnPro: 3.236 ± 2.208
0.0AsnGln: 0.0 ± 0.0
0.0AsnArg: 0.0 ± 0.0
0.0AsnSer: 0.0 ± 0.0
4.854AsnThr: 4.854 ± 1.14
3.236AsnVal: 3.236 ± 0.018
0.0AsnTrp: 0.0 ± 0.0
1.618AsnTyr: 1.618 ± 1.122
0.0AsnXaa: 0.0 ± 0.0
Pro
3.236ProAla: 3.236 ± 0.018
1.618ProCys: 1.618 ± 1.122
1.618ProAsp: 1.618 ± 1.122
4.854ProGlu: 4.854 ± 1.14
4.854ProPhe: 4.854 ± 1.14
6.472ProGly: 6.472 ± 4.415
0.0ProHis: 0.0 ± 0.0
3.236ProIle: 3.236 ± 2.208
0.0ProLys: 0.0 ± 0.0
0.0ProLeu: 0.0 ± 0.0
1.618ProMet: 1.618 ± 1.104
1.618ProAsn: 1.618 ± 1.122
0.0ProPro: 0.0 ± 0.0
1.618ProGln: 1.618 ± 1.122
3.236ProArg: 3.236 ± 2.244
4.854ProSer: 4.854 ± 3.366
1.618ProThr: 1.618 ± 1.104
1.618ProVal: 1.618 ± 1.104
1.618ProTrp: 1.618 ± 1.104
1.618ProTyr: 1.618 ± 1.122
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
1.618GlnGly: 1.618 ± 1.104
0.0GlnHis: 0.0 ± 0.0
3.236GlnIle: 3.236 ± 2.244
1.618GlnLys: 1.618 ± 1.122
3.236GlnLeu: 3.236 ± 2.244
3.236GlnMet: 3.236 ± 0.018
1.618GlnAsn: 1.618 ± 1.104
0.0GlnPro: 0.0 ± 0.0
1.618GlnGln: 1.618 ± 1.104
1.618GlnArg: 1.618 ± 1.104
1.618GlnSer: 1.618 ± 1.104
3.236GlnThr: 3.236 ± 2.208
0.0GlnVal: 0.0 ± 0.0
1.618GlnTrp: 1.618 ± 1.104
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.618ArgAla: 1.618 ± 1.122
0.0ArgCys: 0.0 ± 0.0
11.327ArgAsp: 11.327 ± 3.402
1.618ArgGlu: 1.618 ± 1.122
1.618ArgPhe: 1.618 ± 1.122
6.472ArgGly: 6.472 ± 2.19
0.0ArgHis: 0.0 ± 0.0
3.236ArgIle: 3.236 ± 2.208
8.091ArgLys: 8.091 ± 3.294
8.091ArgLeu: 8.091 ± 3.384
0.0ArgMet: 0.0 ± 0.0
0.0ArgAsn: 0.0 ± 0.0
6.472ArgPro: 6.472 ± 0.036
0.0ArgGln: 0.0 ± 0.0
8.091ArgArg: 8.091 ± 3.294
6.472ArgSer: 6.472 ± 2.262
8.091ArgThr: 8.091 ± 5.519
3.236ArgVal: 3.236 ± 2.208
1.618ArgTrp: 1.618 ± 1.122
3.236ArgTyr: 3.236 ± 2.244
0.0ArgXaa: 0.0 ± 0.0
Ser
4.854SerAla: 4.854 ± 1.14
0.0SerCys: 0.0 ± 0.0
1.618SerAsp: 1.618 ± 1.104
1.618SerGlu: 1.618 ± 1.104
4.854SerPhe: 4.854 ± 1.14
6.472SerGly: 6.472 ± 4.415
1.618SerHis: 1.618 ± 1.122
3.236SerIle: 3.236 ± 2.208
3.236SerLys: 3.236 ± 0.018
4.854SerLeu: 4.854 ± 3.366
0.0SerMet: 0.0 ± 0.0
1.618SerAsn: 1.618 ± 1.104
1.618SerPro: 1.618 ± 1.122
0.0SerGln: 0.0 ± 0.0
14.563SerArg: 14.563 ± 5.645
11.327SerSer: 11.327 ± 7.727
4.854SerThr: 4.854 ± 3.312
1.618SerVal: 1.618 ± 1.104
0.0SerTrp: 0.0 ± 0.0
0.0SerTyr: 0.0 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
8.091ThrAla: 8.091 ± 5.519
1.618ThrCys: 1.618 ± 1.104
1.618ThrAsp: 1.618 ± 1.122
4.854ThrGlu: 4.854 ± 1.14
1.618ThrPhe: 1.618 ± 1.104
1.618ThrGly: 1.618 ± 1.104
1.618ThrHis: 1.618 ± 1.122
1.618ThrIle: 1.618 ± 1.104
3.236ThrLys: 3.236 ± 0.018
3.236ThrLeu: 3.236 ± 2.208
3.236ThrMet: 3.236 ± 2.208
1.618ThrAsn: 1.618 ± 1.104
6.472ThrPro: 6.472 ± 2.262
1.618ThrGln: 1.618 ± 1.104
6.472ThrArg: 6.472 ± 4.415
3.236ThrSer: 3.236 ± 2.208
3.236ThrThr: 3.236 ± 2.208
3.236ThrVal: 3.236 ± 0.018
1.618ThrTrp: 1.618 ± 1.104
4.854ThrTyr: 4.854 ± 1.086
0.0ThrXaa: 0.0 ± 0.0
Val
4.854ValAla: 4.854 ± 1.14
3.236ValCys: 3.236 ± 0.018
4.854ValAsp: 4.854 ± 1.14
3.236ValGlu: 3.236 ± 0.018
8.091ValPhe: 8.091 ± 3.384
4.854ValGly: 4.854 ± 1.14
1.618ValHis: 1.618 ± 1.122
1.618ValIle: 1.618 ± 1.104
4.854ValLys: 4.854 ± 1.14
3.236ValLeu: 3.236 ± 2.208
0.0ValMet: 0.0 ± 0.0
1.618ValAsn: 1.618 ± 1.122
0.0ValPro: 0.0 ± 0.0
0.0ValGln: 0.0 ± 0.0
1.618ValArg: 1.618 ± 1.104
0.0ValSer: 0.0 ± 0.0
3.236ValThr: 3.236 ± 2.244
0.0ValVal: 0.0 ± 0.0
1.618ValTrp: 1.618 ± 1.122
3.236ValTyr: 3.236 ± 2.208
0.0ValXaa: 0.0 ± 0.0
Trp
3.236TrpAla: 3.236 ± 0.018
1.618TrpCys: 1.618 ± 1.104
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
1.618TrpGly: 1.618 ± 1.122
3.236TrpHis: 3.236 ± 2.208
0.0TrpIle: 0.0 ± 0.0
1.618TrpLys: 1.618 ± 1.122
3.236TrpLeu: 3.236 ± 2.244
0.0TrpMet: 0.0 ± 0.0
1.618TrpAsn: 1.618 ± 1.104
0.0TrpPro: 0.0 ± 0.0
1.618TrpGln: 1.618 ± 1.104
1.618TrpArg: 1.618 ± 1.104
1.618TrpSer: 1.618 ± 1.122
0.0TrpThr: 0.0 ± 0.0
1.618TrpVal: 1.618 ± 1.122
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
6.472TyrAla: 6.472 ± 4.487
0.0TyrCys: 0.0 ± 0.0
3.236TyrAsp: 3.236 ± 2.208
1.618TyrGlu: 1.618 ± 1.104
4.854TyrPhe: 4.854 ± 1.14
4.854TyrGly: 4.854 ± 1.14
1.618TyrHis: 1.618 ± 1.122
1.618TyrIle: 1.618 ± 1.104
1.618TyrLys: 1.618 ± 1.104
0.0TyrLeu: 0.0 ± 0.0
1.618TyrMet: 1.618 ± 1.104
3.236TyrAsn: 3.236 ± 2.208
0.0TyrPro: 0.0 ± 0.0
1.618TyrGln: 1.618 ± 1.104
6.472TyrArg: 6.472 ± 0.036
1.618TyrSer: 1.618 ± 1.122
1.618TyrThr: 1.618 ± 1.104
0.0TyrVal: 0.0 ± 0.0
1.618TyrTrp: 1.618 ± 1.104
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (619 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski