Marinitenerispora sediminis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; Nocardiopsaceae; Marinitenerispora

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5230 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A368T6X3|A0A368T6X3_9ACTN AsnC family transcriptional regulator OS=Marinitenerispora sediminis OX=1931232 GN=DEF24_09175 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84SHH4 pKa = 6.81PVGRR8 pKa = 11.84VGAAAAAGTCLALLLTACGSGYY30 pKa = 10.99GDD32 pKa = 3.49TPEE35 pKa = 5.61GDD37 pKa = 3.47GALTVLFGSSGEE49 pKa = 4.22AEE51 pKa = 4.09TAAVKK56 pKa = 10.25AALAAWSEE64 pKa = 4.26EE65 pKa = 4.04SGVPAEE71 pKa = 5.3AIPAQDD77 pKa = 4.03LVQQLRR83 pKa = 11.84QGFAGGDD90 pKa = 3.67PADD93 pKa = 3.75VFYY96 pKa = 11.32VSPDD100 pKa = 3.16LFQQYY105 pKa = 11.21AEE107 pKa = 4.72GGSLYY112 pKa = 10.06PYY114 pKa = 10.09GDD116 pKa = 3.65QIEE119 pKa = 4.91DD120 pKa = 3.23VDD122 pKa = 4.36DD123 pKa = 4.97FYY125 pKa = 11.2PALRR129 pKa = 11.84DD130 pKa = 3.32SYY132 pKa = 10.66TYY134 pKa = 10.79EE135 pKa = 4.68DD136 pKa = 4.1EE137 pKa = 4.94LYY139 pKa = 10.67CVPKK143 pKa = 10.46DD144 pKa = 4.07YY145 pKa = 9.12NTHH148 pKa = 6.22ALVINTDD155 pKa = 2.96LWEE158 pKa = 4.2EE159 pKa = 4.21AGLGDD164 pKa = 5.71DD165 pKa = 6.16DD166 pKa = 6.2IPTSWEE172 pKa = 3.81EE173 pKa = 3.71LAEE176 pKa = 4.06TAEE179 pKa = 4.06QLTEE183 pKa = 3.86GDD185 pKa = 3.2RR186 pKa = 11.84VGFALNGDD194 pKa = 4.08YY195 pKa = 11.29NSAGTFMLQAGGWFVNDD212 pKa = 4.73DD213 pKa = 3.61NTEE216 pKa = 4.11ATGDD220 pKa = 3.74TPEE223 pKa = 4.38NLAALDD229 pKa = 3.96YY230 pKa = 9.56LTTGLDD236 pKa = 2.74EE237 pKa = 5.53GYY239 pKa = 10.7FSFVKK244 pKa = 10.73DD245 pKa = 2.97IDD247 pKa = 3.9AQSGSEE253 pKa = 3.71ALGRR257 pKa = 11.84GRR259 pKa = 11.84AAMVMDD265 pKa = 4.75GGWVTGAFDD274 pKa = 4.18NDD276 pKa = 3.63YY277 pKa = 11.47PEE279 pKa = 4.89LNWRR283 pKa = 11.84AVEE286 pKa = 4.02LPEE289 pKa = 5.22GPGGQATTVFSNCWGIAEE307 pKa = 4.4ASGDD311 pKa = 3.59HH312 pKa = 6.28EE313 pKa = 4.35AAVDD317 pKa = 3.74LVRR320 pKa = 11.84YY321 pKa = 7.33LTSPEE326 pKa = 3.82QQQAFAEE333 pKa = 4.47DD334 pKa = 4.72FGAVPPRR341 pKa = 11.84EE342 pKa = 4.15SLADD346 pKa = 3.29WTAEE350 pKa = 4.05TFPEE354 pKa = 4.29KK355 pKa = 10.54AAFAAGVDD363 pKa = 3.92YY364 pKa = 11.26ARR366 pKa = 11.84GQVPVPGFMSVLNEE380 pKa = 4.15FTTGMQGVAAGSAEE394 pKa = 4.07PADD397 pKa = 4.13VLAQLQRR404 pKa = 11.84DD405 pKa = 4.01GEE407 pKa = 4.35EE408 pKa = 4.24ALGEE412 pKa = 4.12

Molecular weight: 43.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A368T1V2|A0A368T1V2_9ACTN Aldo/keto reductase OS=Marinitenerispora sediminis OX=1931232 GN=DEF24_19590 PE=4 SV=1
MM1 pKa = 7.78RR2 pKa = 11.84ALIAPPASASALSARR17 pKa = 11.84AARR20 pKa = 11.84VATLLRR26 pKa = 11.84VSATRR31 pKa = 11.84TSLTARR37 pKa = 11.84ARR39 pKa = 11.84SRR41 pKa = 11.84STSSRR46 pKa = 11.84LGVPPATPARR56 pKa = 11.84LSAAPALAALIRR68 pKa = 11.84VLKK71 pKa = 10.53RR72 pKa = 11.84WTTT75 pKa = 3.31

Molecular weight: 7.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5230

0

5230

1586353

22

3991

303.3

32.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.433 ± 0.057

0.748 ± 0.009

6.043 ± 0.034

5.977 ± 0.036

2.649 ± 0.021

9.597 ± 0.033

2.223 ± 0.017

3.081 ± 0.027

1.31 ± 0.023

10.354 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.693 ± 0.014

1.572 ± 0.015

6.347 ± 0.035

2.415 ± 0.022

9.124 ± 0.044

4.684 ± 0.024

5.488 ± 0.025

8.828 ± 0.032

1.494 ± 0.015

1.939 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski