Serinibacter arcticus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Beutenbergiaceae; Serinibacter

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2999 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Z1DXW7|A0A4Z1DXW7_9MICO Phosphate starvation-inducible protein PhoH predicted ATPase OS=Serinibacter arcticus OX=1655435 GN=SERN_1969 PE=4 SV=1
MM1 pKa = 7.39AVVGLAASSLVLAGCSSEE19 pKa = 4.22RR20 pKa = 11.84GEE22 pKa = 4.49GGSDD26 pKa = 3.2GSSSEE31 pKa = 4.25GGSGTSSEE39 pKa = 4.35TGEE42 pKa = 4.16AAGPTTFTFASSSDD56 pKa = 3.77PASLDD61 pKa = 3.26PAFASDD67 pKa = 3.92GEE69 pKa = 4.5SFRR72 pKa = 11.84VARR75 pKa = 11.84QMFEE79 pKa = 3.81GLVGVEE85 pKa = 4.84PGTADD90 pKa = 3.86PAPLLAEE97 pKa = 4.14SWDD100 pKa = 3.68VSDD103 pKa = 6.37DD104 pKa = 3.4GLEE107 pKa = 3.93YY108 pKa = 10.56TFQLKK113 pKa = 10.46EE114 pKa = 4.0GVSFHH119 pKa = 7.64DD120 pKa = 3.56GTPFNGDD127 pKa = 3.19AVCFNFDD134 pKa = 2.93RR135 pKa = 11.84WDD137 pKa = 3.6GFTGIAASEE146 pKa = 4.2SMSYY150 pKa = 10.97YY151 pKa = 8.36WGKK154 pKa = 10.82VNGGYY159 pKa = 10.35EE160 pKa = 4.2GAGKK164 pKa = 10.03YY165 pKa = 9.85ASCEE169 pKa = 4.07APDD172 pKa = 4.39DD173 pKa = 3.76ATAVITLSSPLPEE186 pKa = 4.01LVAALSLPAFSMQSPTALAEE206 pKa = 4.01YY207 pKa = 10.27GADD210 pKa = 3.12EE211 pKa = 4.51VGGSEE216 pKa = 5.19DD217 pKa = 4.66APTLPEE223 pKa = 4.16YY224 pKa = 10.39ATDD227 pKa = 3.97HH228 pKa = 6.1PTGTGPFTFEE238 pKa = 3.69SWSPGEE244 pKa = 4.15NVTLAANTEE253 pKa = 4.13YY254 pKa = 9.94WGEE257 pKa = 3.96QGQITTVIFPVISDD271 pKa = 3.56ATARR275 pKa = 11.84RR276 pKa = 11.84QALEE280 pKa = 4.12AGDD283 pKa = 3.54IDD285 pKa = 5.63GYY287 pKa = 11.33DD288 pKa = 3.43LVGPADD294 pKa = 3.76VVALEE299 pKa = 4.21DD300 pKa = 3.2AGYY303 pKa = 8.83TIEE306 pKa = 5.42NRR308 pKa = 11.84DD309 pKa = 3.96PFNVLYY315 pKa = 10.85LGMNQAVPEE324 pKa = 4.19LADD327 pKa = 3.07IRR329 pKa = 11.84VRR331 pKa = 11.84QAIAHH336 pKa = 6.96AIDD339 pKa = 3.84KK340 pKa = 9.98DD341 pKa = 3.83ALVAATLPEE350 pKa = 4.32GTLVATNFVPPSVRR364 pKa = 11.84GHH366 pKa = 6.2SDD368 pKa = 3.39DD369 pKa = 3.83VPTYY373 pKa = 11.21DD374 pKa = 4.58FDD376 pKa = 3.95QDD378 pKa = 3.37EE379 pKa = 4.61ARR381 pKa = 11.84SLLAEE386 pKa = 4.75AGVSDD391 pKa = 3.91LTLNFTYY398 pKa = 7.79PTNVSRR404 pKa = 11.84PYY406 pKa = 9.99MPTPEE411 pKa = 4.04QVFEE415 pKa = 4.97RR416 pKa = 11.84IAADD420 pKa = 3.64LEE422 pKa = 4.56EE423 pKa = 4.36VGITVEE429 pKa = 4.16ATPLPWSPDD438 pKa = 3.31YY439 pKa = 11.15LDD441 pKa = 5.65RR442 pKa = 11.84IQGGADD448 pKa = 3.12HH449 pKa = 7.02GLHH452 pKa = 6.13LLGWTGDD459 pKa = 3.72YY460 pKa = 11.07NDD462 pKa = 4.18TYY464 pKa = 11.73NFIGVFFGAQSNEE477 pKa = 3.57WGFDD481 pKa = 3.45DD482 pKa = 4.47PALFEE487 pKa = 4.47SLSTARR493 pKa = 11.84VATDD497 pKa = 3.22EE498 pKa = 4.59AEE500 pKa = 4.11QTSLYY505 pKa = 10.79EE506 pKa = 3.99EE507 pKa = 4.8ANVQIMEE514 pKa = 4.55NLPGIPIAHH523 pKa = 7.04PVPSLAFRR531 pKa = 11.84PGVEE535 pKa = 4.66NYY537 pKa = 7.8PASPVQDD544 pKa = 3.03EE545 pKa = 5.16VYY547 pKa = 11.09NVITLTDD554 pKa = 3.21

Molecular weight: 58.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Z1E3U8|A0A4Z1E3U8_9MICO Putative lipoprotein OS=Serinibacter arcticus OX=1655435 GN=SERN_1446 PE=4 SV=1
MM1 pKa = 7.56AVPKK5 pKa = 10.48RR6 pKa = 11.84KK7 pKa = 9.07MSRR10 pKa = 11.84SNTRR14 pKa = 11.84ARR16 pKa = 11.84RR17 pKa = 11.84SQWKK21 pKa = 8.13ATPATLSTCSKK32 pKa = 10.21CKK34 pKa = 10.33APRR37 pKa = 11.84LSHH40 pKa = 5.71QACPSCGAYY49 pKa = 9.97GEE51 pKa = 4.24RR52 pKa = 11.84TYY54 pKa = 11.79AEE56 pKa = 5.25AIRR59 pKa = 11.84SDD61 pKa = 3.24AA62 pKa = 4.14

Molecular weight: 6.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2999

0

2999

1041505

37

3780

347.3

36.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.299 ± 0.062

0.484 ± 0.009

6.436 ± 0.038

5.484 ± 0.039

2.547 ± 0.029

9.567 ± 0.042

1.987 ± 0.025

3.366 ± 0.031

1.253 ± 0.023

10.172 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.568 ± 0.016

1.582 ± 0.028

5.892 ± 0.042

2.562 ± 0.021

7.518 ± 0.061

5.418 ± 0.03

6.698 ± 0.058

9.926 ± 0.049

1.48 ± 0.019

1.764 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski