Capybara microvirus Cap1_SP_107

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVN8|A0A4V1FVN8_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_107 OX=2584805 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.74VTSKK6 pKa = 10.62LYY8 pKa = 10.57KK9 pKa = 8.79VGPWFSQPQDD19 pKa = 3.88DD20 pKa = 3.74IRR22 pKa = 11.84VVVAYY27 pKa = 10.36DD28 pKa = 3.48EE29 pKa = 5.89DD30 pKa = 4.48GNQYY34 pKa = 7.61TTFQPYY40 pKa = 10.34EE41 pKa = 4.16GDD43 pKa = 3.3PDD45 pKa = 3.81KK46 pKa = 11.35FGTADD51 pKa = 3.96DD52 pKa = 4.13WSLSNLMAAGIDD64 pKa = 3.37PASFNTTYY72 pKa = 11.2SPLTRR77 pKa = 11.84LDD79 pKa = 3.32SAAEE83 pKa = 3.94FAQISSVAEE92 pKa = 3.83ALIDD96 pKa = 3.94EE97 pKa = 5.15LDD99 pKa = 3.55AAAAEE104 pKa = 4.48PQVSMEE110 pKa = 4.76DD111 pKa = 3.48KK112 pKa = 10.96IEE114 pKa = 3.79

Molecular weight: 12.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7S1|A0A4P8W7S1_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_107 OX=2584805 PE=3 SV=1
MM1 pKa = 7.71KK2 pKa = 9.9STITFTNPTTYY13 pKa = 10.47FHH15 pKa = 7.68PDD17 pKa = 3.06YY18 pKa = 10.85SAGSVTIQNPALYY31 pKa = 10.24FSDD34 pKa = 3.37TTKK37 pKa = 10.05QQGYY41 pKa = 5.41EE42 pKa = 3.64TRR44 pKa = 11.84LYY46 pKa = 10.78FEE48 pKa = 4.62YY49 pKa = 10.53EE50 pKa = 3.84GTKK53 pKa = 10.7AKK55 pKa = 10.89GGDD58 pKa = 3.48SYY60 pKa = 11.65FYY62 pKa = 10.75TLTYY66 pKa = 11.07NNAALPHH73 pKa = 6.55YY74 pKa = 10.06IPALNSVVRR83 pKa = 11.84GSQLGGIPCFDD94 pKa = 4.13YY95 pKa = 11.43EE96 pKa = 4.63DD97 pKa = 3.33IRR99 pKa = 11.84YY100 pKa = 7.04ITHH103 pKa = 6.78GGLDD107 pKa = 3.36KK108 pKa = 11.1KK109 pKa = 10.59LLRR112 pKa = 11.84NFGTKK117 pKa = 8.06MKK119 pKa = 10.51YY120 pKa = 9.86FVGCEE125 pKa = 3.73LGEE128 pKa = 4.51GKK130 pKa = 10.54GSRR133 pKa = 11.84GAGNNPHH140 pKa = 5.57YY141 pKa = 10.52HH142 pKa = 5.6VLFFLTNAEE151 pKa = 4.14DD152 pKa = 3.33EE153 pKa = 4.58RR154 pKa = 11.84YY155 pKa = 8.55PYY157 pKa = 10.65HH158 pKa = 7.55RR159 pKa = 11.84ILPEE163 pKa = 3.75QFEE166 pKa = 4.68TLIKK170 pKa = 9.83TYY172 pKa = 9.21WQGTSEE178 pKa = 4.65KK179 pKa = 9.53IDD181 pKa = 3.37YY182 pKa = 10.58SKK184 pKa = 11.64AKK186 pKa = 10.35FGIARR191 pKa = 11.84PGNNLGLLDD200 pKa = 4.35GFAGTLYY207 pKa = 10.06CAKK210 pKa = 9.8YY211 pKa = 8.17VCKK214 pKa = 10.37DD215 pKa = 3.27ASVKK219 pKa = 10.12NLEE222 pKa = 4.28RR223 pKa = 11.84KK224 pKa = 9.78VYY226 pKa = 9.98AQLSSILTDD235 pKa = 3.34EE236 pKa = 4.64NNRR239 pKa = 11.84KK240 pKa = 9.32PIEE243 pKa = 4.14KK244 pKa = 9.99RR245 pKa = 11.84LTPSEE250 pKa = 4.18LEE252 pKa = 3.75KK253 pKa = 10.55EE254 pKa = 4.03IRR256 pKa = 11.84SRR258 pKa = 11.84LTDD261 pKa = 3.4FRR263 pKa = 11.84NRR265 pKa = 11.84YY266 pKa = 6.18SAKK269 pKa = 9.39VRR271 pKa = 11.84ISNGVGNYY279 pKa = 10.57AFIHH283 pKa = 5.62PSFRR287 pKa = 11.84EE288 pKa = 4.05DD289 pKa = 3.24TFSVSMPHH297 pKa = 6.96KK298 pKa = 10.68NGFKK302 pKa = 10.1RR303 pKa = 11.84KK304 pKa = 9.63KK305 pKa = 9.75LGLYY309 pKa = 8.18YY310 pKa = 10.2FRR312 pKa = 11.84KK313 pKa = 8.79YY314 pKa = 9.59FTDD317 pKa = 3.3IVYY320 pKa = 10.55DD321 pKa = 3.74KK322 pKa = 10.45NKK324 pKa = 10.1SPRR327 pKa = 11.84RR328 pKa = 11.84VLNQRR333 pKa = 11.84GIEE336 pKa = 3.9YY337 pKa = 10.26RR338 pKa = 11.84IDD340 pKa = 3.38HH341 pKa = 6.55LGEE344 pKa = 4.15GLEE347 pKa = 4.36KK348 pKa = 10.43KK349 pKa = 10.67AKK351 pKa = 6.4TTYY354 pKa = 10.56KK355 pKa = 10.38CVQFYY360 pKa = 10.86LKK362 pKa = 10.64NSEE365 pKa = 4.04YY366 pKa = 9.98RR367 pKa = 11.84DD368 pKa = 3.54KK369 pKa = 11.58YY370 pKa = 9.24MKK372 pKa = 10.42SPHH375 pKa = 5.69RR376 pKa = 11.84TVEE379 pKa = 3.56PKK381 pKa = 9.44YY382 pKa = 8.97TVKK385 pKa = 10.46EE386 pKa = 4.01LEE388 pKa = 4.16RR389 pKa = 11.84LLSIDD394 pKa = 3.71NNDD397 pKa = 4.58IINSMYY403 pKa = 10.53YY404 pKa = 10.49DD405 pKa = 3.32YY406 pKa = 12.11AMYY409 pKa = 10.79KK410 pKa = 10.21NIYY413 pKa = 7.04EE414 pKa = 3.7HH415 pKa = 6.96HH416 pKa = 6.75YY417 pKa = 7.96YY418 pKa = 10.62YY419 pKa = 10.57EE420 pKa = 4.18YY421 pKa = 10.7TRR423 pKa = 11.84EE424 pKa = 4.16LDD426 pKa = 3.17PMEE429 pKa = 5.04DD430 pKa = 3.17YY431 pKa = 11.17RR432 pKa = 11.84RR433 pKa = 11.84FLTSTFGVDD442 pKa = 3.89GLTTVDD448 pKa = 3.6KK449 pKa = 10.06TALPSGYY456 pKa = 9.54YY457 pKa = 9.78SYY459 pKa = 11.29SRR461 pKa = 11.84HH462 pKa = 5.96PFFNEE467 pKa = 3.71CTDD470 pKa = 3.96LFSLLDD476 pKa = 4.16DD477 pKa = 4.17LVSFYY482 pKa = 10.8FVEE485 pKa = 5.0LSEE488 pKa = 4.41KK489 pKa = 7.17TQKK492 pKa = 10.83DD493 pKa = 3.46YY494 pKa = 11.8EE495 pKa = 4.2EE496 pKa = 4.3RR497 pKa = 11.84KK498 pKa = 8.32RR499 pKa = 11.84TKK501 pKa = 10.71NMYY504 pKa = 10.08RR505 pKa = 11.84DD506 pKa = 3.31LKK508 pKa = 10.62LRR510 pKa = 11.84KK511 pKa = 9.11EE512 pKa = 4.2GLFAVV517 pKa = 4.53

Molecular weight: 60.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1577

114

586

394.3

44.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.531 ± 1.915

0.698 ± 0.283

6.468 ± 0.74

5.834 ± 1.023

5.263 ± 0.987

6.595 ± 0.678

1.458 ± 0.486

5.073 ± 0.396

7.229 ± 1.429

7.546 ± 0.553

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.029 ± 0.196

6.278 ± 0.805

3.044 ± 0.769

4.375 ± 1.445

4.629 ± 0.94

8.117 ± 1.114

6.785 ± 0.241

4.629 ± 0.331

0.888 ± 0.302

6.531 ± 1.46
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski