Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_107

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.98AlaAla: 6.98 ± 4.998
0.0AlaCys: 0.0 ± 0.0
4.442AlaAsp: 4.442 ± 3.012
6.345AlaGlu: 6.345 ± 3.172
3.173AlaPhe: 3.173 ± 0.79
5.711AlaGly: 5.711 ± 0.394
0.635AlaHis: 0.635 ± 0.41
0.635AlaIle: 0.635 ± 0.611
8.883AlaLys: 8.883 ± 3.172
5.076AlaLeu: 5.076 ± 1.359
1.269AlaMet: 1.269 ± 0.569
1.904AlaAsn: 1.904 ± 1.834
1.269AlaPro: 1.269 ± 0.82
5.076AlaGln: 5.076 ± 1.387
1.269AlaArg: 1.269 ± 0.569
5.076AlaSer: 5.076 ± 1.994
1.904AlaThr: 1.904 ± 1.117
1.904AlaVal: 1.904 ± 0.712
0.635AlaTrp: 0.635 ± 0.41
3.173AlaTyr: 3.173 ± 1.7
0.0AlaXaa: 0.0 ± 0.0
Cys
0.635CysAla: 0.635 ± 0.478
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.635CysGlu: 0.635 ± 0.478
0.635CysPhe: 0.635 ± 0.478
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.635CysLys: 0.635 ± 0.478
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.635CysSer: 0.635 ± 0.41
0.635CysThr: 0.635 ± 0.478
1.269CysVal: 1.269 ± 0.447
0.635CysTrp: 0.635 ± 0.41
1.269CysTyr: 1.269 ± 0.82
0.0CysXaa: 0.0 ± 0.0
Asp
3.807AspAla: 3.807 ± 0.969
0.0AspCys: 0.0 ± 0.0
2.538AspAsp: 2.538 ± 1.783
2.538AspGlu: 2.538 ± 1.973
2.538AspPhe: 2.538 ± 1.072
3.807AspGly: 3.807 ± 0.61
1.269AspHis: 1.269 ± 0.447
5.711AspIle: 5.711 ± 1.043
6.98AspLys: 6.98 ± 2.319
6.98AspLeu: 6.98 ± 2.06
1.269AspMet: 1.269 ± 1.223
4.442AspAsn: 4.442 ± 1.188
1.904AspPro: 1.904 ± 1.889
1.269AspGln: 1.269 ± 1.223
0.635AspArg: 0.635 ± 0.41
3.173AspSer: 3.173 ± 1.107
3.807AspThr: 3.807 ± 0.663
3.173AspVal: 3.173 ± 1.495
1.904AspTrp: 1.904 ± 1.025
6.98AspTyr: 6.98 ± 2.017
0.0AspXaa: 0.0 ± 0.0
Glu
3.807GluAla: 3.807 ± 1.808
0.635GluCys: 0.635 ± 0.478
4.442GluAsp: 4.442 ± 2.261
1.269GluGlu: 1.269 ± 0.569
3.173GluPhe: 3.173 ± 1.272
3.807GluGly: 3.807 ± 1.749
1.269GluHis: 1.269 ± 0.569
1.904GluIle: 1.904 ± 1.079
4.442GluLys: 4.442 ± 1.917
5.711GluLeu: 5.711 ± 2.197
1.904GluMet: 1.904 ± 1.298
1.904GluAsn: 1.904 ± 0.296
1.269GluPro: 1.269 ± 0.986
3.173GluGln: 3.173 ± 2.256
5.076GluArg: 5.076 ± 1.202
2.538GluSer: 2.538 ± 1.125
3.807GluThr: 3.807 ± 2.159
0.635GluVal: 0.635 ± 0.41
0.635GluTrp: 0.635 ± 0.41
6.345GluTyr: 6.345 ± 0.896
0.0GluXaa: 0.0 ± 0.0
Phe
1.904PheAla: 1.904 ± 1.216
0.0PheCys: 0.0 ± 0.0
4.442PheAsp: 4.442 ± 2.258
3.173PheGlu: 3.173 ± 0.808
2.538PhePhe: 2.538 ± 0.894
7.614PheGly: 7.614 ± 1.824
1.269PheHis: 1.269 ± 0.447
1.269PheIle: 1.269 ± 0.447
1.904PheLys: 1.904 ± 0.712
2.538PheLeu: 2.538 ± 0.894
0.0PheMet: 0.0 ± 0.0
3.807PheAsn: 3.807 ± 1.466
0.0PhePro: 0.0 ± 0.0
3.173PheGln: 3.173 ± 1.272
2.538PheArg: 2.538 ± 1.279
7.614PheSer: 7.614 ± 1.065
3.173PheThr: 3.173 ± 0.808
2.538PheVal: 2.538 ± 0.894
0.0PheTrp: 0.0 ± 0.0
3.173PheTyr: 3.173 ± 0.983
0.0PheXaa: 0.0 ± 0.0
Gly
3.807GlyAla: 3.807 ± 0.919
0.635GlyCys: 0.635 ± 0.478
3.807GlyAsp: 3.807 ± 1.466
4.442GlyGlu: 4.442 ± 0.618
3.807GlyPhe: 3.807 ± 1.424
3.807GlyGly: 3.807 ± 0.82
0.0GlyHis: 0.0 ± 0.0
5.076GlyIle: 5.076 ± 1.428
3.807GlyLys: 3.807 ± 1.182
6.345GlyLeu: 6.345 ± 2.223
0.0GlyMet: 0.0 ± 0.0
5.711GlyAsn: 5.711 ± 1.667
0.635GlyPro: 0.635 ± 0.962
3.173GlyGln: 3.173 ± 1.329
3.173GlyArg: 3.173 ± 2.05
3.807GlySer: 3.807 ± 1.021
7.614GlyThr: 7.614 ± 0.336
3.173GlyVal: 3.173 ± 0.808
0.635GlyTrp: 0.635 ± 0.41
2.538GlyTyr: 2.538 ± 0.546
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.635HisCys: 0.635 ± 0.41
0.635HisAsp: 0.635 ± 0.41
0.0HisGlu: 0.0 ± 0.0
1.269HisPhe: 1.269 ± 0.82
0.635HisGly: 0.635 ± 0.478
0.635HisHis: 0.635 ± 0.478
0.635HisIle: 0.635 ± 0.41
0.635HisLys: 0.635 ± 0.478
1.904HisLeu: 1.904 ± 0.712
0.635HisMet: 0.635 ± 0.611
0.0HisAsn: 0.0 ± 0.0
1.904HisPro: 1.904 ± 1.435
0.635HisGln: 0.635 ± 0.41
1.269HisArg: 1.269 ± 0.957
0.635HisSer: 0.635 ± 0.611
0.0HisThr: 0.0 ± 0.0
0.635HisVal: 0.635 ± 0.478
0.0HisTrp: 0.0 ± 0.0
1.904HisTyr: 1.904 ± 1.435
0.0HisXaa: 0.0 ± 0.0
Ile
3.173IleAla: 3.173 ± 1.451
0.0IleCys: 0.0 ± 0.0
6.345IleAsp: 6.345 ± 1.336
5.711IleGlu: 5.711 ± 1.001
1.904IlePhe: 1.904 ± 1.23
5.076IleGly: 5.076 ± 2.314
0.635IleHis: 0.635 ± 0.478
1.269IleIle: 1.269 ± 0.447
1.269IleLys: 1.269 ± 0.447
2.538IleLeu: 2.538 ± 0.894
0.635IleMet: 0.635 ± 0.41
4.442IleAsn: 4.442 ± 1.188
2.538IlePro: 2.538 ± 0.894
3.173IleGln: 3.173 ± 1.451
2.538IleArg: 2.538 ± 1.035
3.807IleSer: 3.807 ± 1.466
2.538IleThr: 2.538 ± 0.894
0.635IleVal: 0.635 ± 0.478
0.635IleTrp: 0.635 ± 0.611
1.904IleTyr: 1.904 ± 0.296
0.0IleXaa: 0.0 ± 0.0
Lys
7.614LysAla: 7.614 ± 1.34
0.635LysCys: 0.635 ± 0.478
5.076LysAsp: 5.076 ± 2.491
4.442LysGlu: 4.442 ± 1.366
3.173LysPhe: 3.173 ± 0.735
3.173LysGly: 3.173 ± 1.116
0.0LysHis: 0.0 ± 0.0
5.076LysIle: 5.076 ± 1.387
4.442LysLys: 4.442 ± 1.366
3.807LysLeu: 3.807 ± 1.252
1.269LysMet: 1.269 ± 0.569
7.614LysAsn: 7.614 ± 1.637
0.635LysPro: 0.635 ± 0.478
3.807LysGln: 3.807 ± 2.859
3.173LysArg: 3.173 ± 1.371
3.807LysSer: 3.807 ± 1.021
6.345LysThr: 6.345 ± 0.98
4.442LysVal: 4.442 ± 1.775
0.0LysTrp: 0.0 ± 0.0
3.807LysTyr: 3.807 ± 2.168
0.0LysXaa: 0.0 ± 0.0
Leu
3.807LeuAla: 3.807 ± 2.235
0.635LeuCys: 0.635 ± 0.41
6.345LeuAsp: 6.345 ± 2.036
3.807LeuGlu: 3.807 ± 1.446
3.173LeuPhe: 3.173 ± 0.983
7.614LeuGly: 7.614 ± 1.896
0.635LeuHis: 0.635 ± 0.41
4.442LeuIle: 4.442 ± 0.993
6.345LeuLys: 6.345 ± 1.569
5.076LeuLeu: 5.076 ± 1.788
1.904LeuMet: 1.904 ± 1.111
5.076LeuAsn: 5.076 ± 1.035
3.807LeuPro: 3.807 ± 1.341
0.0LeuGln: 0.0 ± 0.0
3.173LeuArg: 3.173 ± 0.808
6.345LeuSer: 6.345 ± 1.119
6.98LeuThr: 6.98 ± 2.529
1.904LeuVal: 1.904 ± 0.712
0.0LeuTrp: 0.0 ± 0.0
4.442LeuTyr: 4.442 ± 1.611
0.0LeuXaa: 0.0 ± 0.0
Met
3.173MetAla: 3.173 ± 1.7
0.0MetCys: 0.0 ± 0.0
1.269MetAsp: 1.269 ± 0.579
1.269MetGlu: 1.269 ± 0.986
0.635MetPhe: 0.635 ± 0.611
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.635MetIle: 0.635 ± 0.41
3.173MetLys: 3.173 ± 1.355
1.904MetLeu: 1.904 ± 1.117
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.635MetPro: 0.635 ± 0.478
1.269MetGln: 1.269 ± 0.579
0.0MetArg: 0.0 ± 0.0
1.904MetSer: 1.904 ± 0.795
0.635MetThr: 0.635 ± 0.611
0.635MetVal: 0.635 ± 0.41
0.635MetTrp: 0.635 ± 0.611
2.538MetTyr: 2.538 ± 1.279
0.0MetXaa: 0.0 ± 0.0
Asn
3.807AsnAla: 3.807 ± 2.159
0.0AsnCys: 0.0 ± 0.0
3.173AsnAsp: 3.173 ± 0.79
4.442AsnGlu: 4.442 ± 1.347
2.538AsnPhe: 2.538 ± 0.433
3.807AsnGly: 3.807 ± 0.663
0.0AsnHis: 0.0 ± 0.0
1.269AsnIle: 1.269 ± 0.569
2.538AsnLys: 2.538 ± 0.433
5.711AsnLeu: 5.711 ± 1.246
1.269AsnMet: 1.269 ± 0.476
6.345AsnAsn: 6.345 ± 1.618
5.076AsnPro: 5.076 ± 1.076
3.807AsnGln: 3.807 ± 0.969
3.173AsnArg: 3.173 ± 1.116
5.076AsnSer: 5.076 ± 1.045
2.538AsnThr: 2.538 ± 1.08
5.076AsnVal: 5.076 ± 2.314
1.269AsnTrp: 1.269 ± 0.579
1.904AsnTyr: 1.904 ± 0.712
0.0AsnXaa: 0.0 ± 0.0
Pro
1.904ProAla: 1.904 ± 1.216
0.635ProCys: 0.635 ± 0.478
2.538ProAsp: 2.538 ± 0.943
1.269ProGlu: 1.269 ± 0.447
1.269ProPhe: 1.269 ± 0.569
1.269ProGly: 1.269 ± 0.447
2.538ProHis: 2.538 ± 1.913
1.269ProIle: 1.269 ± 0.447
0.635ProLys: 0.635 ± 0.478
3.173ProLeu: 3.173 ± 1.272
2.538ProMet: 2.538 ± 1.072
0.635ProAsn: 0.635 ± 0.41
0.0ProPro: 0.0 ± 0.0
1.904ProGln: 1.904 ± 1.873
0.635ProArg: 0.635 ± 0.478
1.904ProSer: 1.904 ± 1.435
2.538ProThr: 2.538 ± 0.85
1.269ProVal: 1.269 ± 0.82
0.635ProTrp: 0.635 ± 0.962
1.904ProTyr: 1.904 ± 0.873
0.0ProXaa: 0.0 ± 0.0
Gln
3.173GlnAla: 3.173 ± 3.056
0.0GlnCys: 0.0 ± 0.0
2.538GlnAsp: 2.538 ± 1.391
1.269GlnGlu: 1.269 ± 0.579
3.173GlnPhe: 3.173 ± 0.448
3.807GlnGly: 3.807 ± 0.591
0.0GlnHis: 0.0 ± 0.0
6.345GlnIle: 6.345 ± 2.438
3.173GlnLys: 3.173 ± 1.451
4.442GlnLeu: 4.442 ± 1.899
0.635GlnMet: 0.635 ± 0.558
2.538GlnAsn: 2.538 ± 0.85
2.538GlnPro: 2.538 ± 1.911
1.269GlnGln: 1.269 ± 0.447
2.538GlnArg: 2.538 ± 0.85
0.635GlnSer: 0.635 ± 0.611
2.538GlnThr: 2.538 ± 1.125
2.538GlnVal: 2.538 ± 1.08
0.0GlnTrp: 0.0 ± 0.0
0.635GlnTyr: 0.635 ± 0.962
0.0GlnXaa: 0.0 ± 0.0
Arg
1.269ArgAla: 1.269 ± 1.223
0.0ArgCys: 0.0 ± 0.0
3.173ArgAsp: 3.173 ± 0.448
1.269ArgGlu: 1.269 ± 0.957
2.538ArgPhe: 2.538 ± 1.072
3.807ArgGly: 3.807 ± 0.82
0.635ArgHis: 0.635 ± 0.478
2.538ArgIle: 2.538 ± 1.279
5.076ArgLys: 5.076 ± 2.526
5.711ArgLeu: 5.711 ± 0.984
1.269ArgMet: 1.269 ± 0.82
3.807ArgAsn: 3.807 ± 1.424
1.904ArgPro: 1.904 ± 0.712
0.0ArgGln: 0.0 ± 0.0
1.904ArgArg: 1.904 ± 0.83
3.173ArgSer: 3.173 ± 1.459
3.173ArgThr: 3.173 ± 0.808
1.269ArgVal: 1.269 ± 0.986
0.0ArgTrp: 0.0 ± 0.0
3.807ArgTyr: 3.807 ± 1.341
0.0ArgXaa: 0.0 ± 0.0
Ser
5.711SerAla: 5.711 ± 0.727
0.635SerCys: 0.635 ± 0.41
1.269SerAsp: 1.269 ± 0.447
6.98SerGlu: 6.98 ± 1.356
4.442SerPhe: 4.442 ± 0.655
3.807SerGly: 3.807 ± 1.182
1.269SerHis: 1.269 ± 0.82
5.711SerIle: 5.711 ± 1.11
4.442SerLys: 4.442 ± 2.163
4.442SerLeu: 4.442 ± 1.177
3.173SerMet: 3.173 ± 1.0
3.807SerAsn: 3.807 ± 0.891
2.538SerPro: 2.538 ± 1.035
3.807SerGln: 3.807 ± 0.891
5.711SerArg: 5.711 ± 1.344
8.883SerSer: 8.883 ± 2.834
3.173SerThr: 3.173 ± 1.116
6.345SerVal: 6.345 ± 0.652
0.0SerTrp: 0.0 ± 0.0
5.076SerTyr: 5.076 ± 2.145
0.0SerXaa: 0.0 ± 0.0
Thr
5.076ThrAla: 5.076 ± 1.994
0.635ThrCys: 0.635 ± 0.41
4.442ThrAsp: 4.442 ± 1.676
1.904ThrGlu: 1.904 ± 1.117
3.173ThrPhe: 3.173 ± 1.355
1.904ThrGly: 1.904 ± 0.795
0.635ThrHis: 0.635 ± 0.478
4.442ThrIle: 4.442 ± 1.774
4.442ThrLys: 4.442 ± 1.374
4.442ThrLeu: 4.442 ± 0.736
0.0ThrMet: 0.0 ± 0.0
3.173ThrAsn: 3.173 ± 1.613
2.538ThrPro: 2.538 ± 0.433
4.442ThrGln: 4.442 ± 1.927
1.904ThrArg: 1.904 ± 1.216
6.345ThrSer: 6.345 ± 1.619
8.883ThrThr: 8.883 ± 1.045
3.807ThrVal: 3.807 ± 0.82
0.0ThrTrp: 0.0 ± 0.0
5.711ThrTyr: 5.711 ± 0.984
0.0ThrXaa: 0.0 ± 0.0
Val
1.904ValAla: 1.904 ± 1.873
1.269ValCys: 1.269 ± 0.447
3.807ValAsp: 3.807 ± 0.663
2.538ValGlu: 2.538 ± 0.546
0.635ValPhe: 0.635 ± 0.41
4.442ValGly: 4.442 ± 0.7
0.0ValHis: 0.0 ± 0.0
0.0ValIle: 0.0 ± 0.0
4.442ValLys: 4.442 ± 1.899
3.173ValLeu: 3.173 ± 0.448
0.635ValMet: 0.635 ± 0.434
2.538ValAsn: 2.538 ± 1.125
0.635ValPro: 0.635 ± 0.41
1.904ValGln: 1.904 ± 1.079
3.807ValArg: 3.807 ± 0.663
6.98ValSer: 6.98 ± 2.006
3.173ValThr: 3.173 ± 1.162
2.538ValVal: 2.538 ± 1.899
0.0ValTrp: 0.0 ± 0.0
1.904ValTyr: 1.904 ± 0.83
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.635TrpPhe: 0.635 ± 0.962
0.0TrpGly: 0.0 ± 0.0
0.635TrpHis: 0.635 ± 0.611
0.0TrpIle: 0.0 ± 0.0
0.635TrpLys: 0.635 ± 0.611
0.635TrpLeu: 0.635 ± 0.41
0.635TrpMet: 0.635 ± 0.41
0.635TrpAsn: 0.635 ± 0.611
0.0TrpPro: 0.0 ± 0.0
0.635TrpGln: 0.635 ± 0.478
0.0TrpArg: 0.0 ± 0.0
1.904TrpSer: 1.904 ± 1.025
0.0TrpThr: 0.0 ± 0.0
1.904TrpVal: 1.904 ± 0.795
0.0TrpTrp: 0.0 ± 0.0
0.635TrpTyr: 0.635 ± 0.41
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.807TyrAla: 3.807 ± 0.82
0.635TyrCys: 0.635 ± 0.478
4.442TyrAsp: 4.442 ± 0.655
5.076TyrGlu: 5.076 ± 2.597
8.249TyrPhe: 8.249 ± 3.311
1.904TyrGly: 1.904 ± 0.795
2.538TyrHis: 2.538 ± 0.894
2.538TyrIle: 2.538 ± 0.894
4.442TyrLys: 4.442 ± 0.655
1.904TyrLeu: 1.904 ± 0.712
0.635TyrMet: 0.635 ± 0.478
4.442TyrAsn: 4.442 ± 1.347
0.635TyrPro: 0.635 ± 0.478
1.269TyrGln: 1.269 ± 0.82
3.807TyrArg: 3.807 ± 1.661
6.98TyrSer: 6.98 ± 2.027
4.442TyrThr: 4.442 ± 1.279
0.635TyrVal: 0.635 ± 0.478
1.269TyrTrp: 1.269 ± 0.569
5.711TyrTyr: 5.711 ± 1.516
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1577 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski