Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_668

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.328AlaAla: 3.328 ± 1.108
0.0AlaCys: 0.0 ± 0.0
1.664AlaAsp: 1.664 ± 1.1
0.0AlaGlu: 0.0 ± 0.0
0.832AlaPhe: 0.832 ± 0.55
1.664AlaGly: 1.664 ± 0.687
2.496AlaHis: 2.496 ± 0.941
3.328AlaIle: 3.328 ± 0.953
3.328AlaLys: 3.328 ± 1.816
4.992AlaLeu: 4.992 ± 1.655
2.496AlaMet: 2.496 ± 0.963
4.16AlaAsn: 4.16 ± 2.021
1.664AlaPro: 1.664 ± 1.1
3.328AlaGln: 3.328 ± 1.079
4.16AlaArg: 4.16 ± 1.366
7.488AlaSer: 7.488 ± 2.505
1.664AlaThr: 1.664 ± 1.576
1.664AlaVal: 1.664 ± 0.687
0.832AlaTrp: 0.832 ± 0.55
4.992AlaTyr: 4.992 ± 1.655
0.0AlaXaa: 0.0 ± 0.0
Cys
0.832CysAla: 0.832 ± 0.767
0.0CysCys: 0.0 ± 0.0
1.664CysAsp: 1.664 ± 1.533
1.664CysGlu: 1.664 ± 1.1
0.832CysPhe: 0.832 ± 0.767
0.832CysGly: 0.832 ± 0.767
0.0CysHis: 0.0 ± 0.0
1.664CysIle: 1.664 ± 1.374
0.0CysLys: 0.0 ± 0.0
1.664CysLeu: 1.664 ± 1.533
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.832CysSer: 0.832 ± 0.767
0.0CysThr: 0.0 ± 0.0
3.328CysVal: 3.328 ± 2.055
0.0CysTrp: 0.0 ± 0.0
0.832CysTyr: 0.832 ± 0.767
0.0CysXaa: 0.0 ± 0.0
Asp
4.16AspAla: 4.16 ± 3.134
1.664AspCys: 1.664 ± 1.533
0.832AspAsp: 0.832 ± 1.163
3.328AspGlu: 3.328 ± 1.591
1.664AspPhe: 1.664 ± 1.1
5.824AspGly: 5.824 ± 1.159
1.664AspHis: 1.664 ± 0.659
2.496AspIle: 2.496 ± 1.897
4.16AspLys: 4.16 ± 0.669
4.16AspLeu: 4.16 ± 1.388
0.832AspMet: 0.832 ± 0.788
2.496AspAsn: 2.496 ± 0.941
0.832AspPro: 0.832 ± 0.788
2.496AspGln: 2.496 ± 1.129
0.832AspArg: 0.832 ± 0.55
6.656AspSer: 6.656 ± 0.473
2.496AspThr: 2.496 ± 0.512
4.992AspVal: 4.992 ± 3.185
0.832AspTrp: 0.832 ± 0.767
4.16AspTyr: 4.16 ± 2.087
0.0AspXaa: 0.0 ± 0.0
Glu
3.328GluAla: 3.328 ± 1.154
0.0GluCys: 0.0 ± 0.0
4.16GluAsp: 4.16 ± 2.027
2.496GluGlu: 2.496 ± 1.282
3.328GluPhe: 3.328 ± 0.512
0.832GluGly: 0.832 ± 1.163
1.664GluHis: 1.664 ± 0.687
3.328GluIle: 3.328 ± 1.394
4.16GluLys: 4.16 ± 2.942
2.496GluLeu: 2.496 ± 1.081
0.832GluMet: 0.832 ± 0.788
3.328GluAsn: 3.328 ± 1.862
1.664GluPro: 1.664 ± 1.333
4.992GluGln: 4.992 ± 1.724
3.328GluArg: 3.328 ± 1.544
4.992GluSer: 4.992 ± 2.222
3.328GluThr: 3.328 ± 1.373
4.16GluVal: 4.16 ± 2.364
1.664GluTrp: 1.664 ± 1.1
4.992GluTyr: 4.992 ± 1.883
0.0GluXaa: 0.0 ± 0.0
Phe
3.328PheAla: 3.328 ± 1.394
1.664PheCys: 1.664 ± 0.659
3.328PheAsp: 3.328 ± 1.41
1.664PheGlu: 1.664 ± 1.333
2.496PhePhe: 2.496 ± 1.32
3.328PheGly: 3.328 ± 1.318
0.0PheHis: 0.0 ± 0.0
0.832PheIle: 0.832 ± 0.55
1.664PheLys: 1.664 ± 0.659
0.832PheLeu: 0.832 ± 0.767
2.496PheMet: 2.496 ± 0.567
1.664PheAsn: 1.664 ± 1.1
0.832PhePro: 0.832 ± 0.55
2.496PheGln: 2.496 ± 1.081
2.496PheArg: 2.496 ± 1.65
2.496PheSer: 2.496 ± 1.081
3.328PheThr: 3.328 ± 1.079
4.16PheVal: 4.16 ± 1.529
0.0PheTrp: 0.0 ± 0.0
0.832PheTyr: 0.832 ± 0.767
0.0PheXaa: 0.0 ± 0.0
Gly
5.824GlyAla: 5.824 ± 2.237
0.0GlyCys: 0.0 ± 0.0
2.496GlyAsp: 2.496 ± 0.941
0.832GlyGlu: 0.832 ± 0.55
4.16GlyPhe: 4.16 ± 1.908
4.992GlyGly: 4.992 ± 1.926
0.0GlyHis: 0.0 ± 0.0
5.824GlyIle: 5.824 ± 2.188
4.16GlyLys: 4.16 ± 1.529
2.496GlyLeu: 2.496 ± 1.545
0.0GlyMet: 0.0 ± 0.0
3.328GlyAsn: 3.328 ± 1.591
1.664GlyPro: 1.664 ± 0.659
4.16GlyGln: 4.16 ± 2.751
0.0GlyArg: 0.0 ± 0.0
5.824GlySer: 5.824 ± 2.958
3.328GlyThr: 3.328 ± 1.126
4.992GlyVal: 4.992 ± 1.883
0.0GlyTrp: 0.0 ± 0.0
4.16GlyTyr: 4.16 ± 1.35
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.832HisAsp: 0.832 ± 1.163
0.0HisGlu: 0.0 ± 0.0
0.832HisPhe: 0.832 ± 0.55
4.16HisGly: 4.16 ± 1.94
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
0.832HisLys: 0.832 ± 0.767
4.16HisLeu: 4.16 ± 0.931
0.832HisMet: 0.832 ± 1.163
0.832HisAsn: 0.832 ± 0.767
0.832HisPro: 0.832 ± 0.55
0.832HisGln: 0.832 ± 0.788
0.832HisArg: 0.832 ± 0.767
0.0HisSer: 0.0 ± 0.0
0.832HisThr: 0.832 ± 0.767
1.664HisVal: 1.664 ± 0.687
0.832HisTrp: 0.832 ± 0.55
2.496HisTyr: 2.496 ± 1.32
0.0HisXaa: 0.0 ± 0.0
Ile
1.664IleAla: 1.664 ± 0.687
0.0IleCys: 0.0 ± 0.0
1.664IleAsp: 1.664 ± 1.374
1.664IleGlu: 1.664 ± 0.659
4.16IlePhe: 4.16 ± 1.366
7.488IleGly: 7.488 ± 1.831
1.664IleHis: 1.664 ± 2.326
2.496IleIle: 2.496 ± 0.941
4.16IleLys: 4.16 ± 0.938
4.992IleLeu: 4.992 ± 1.441
2.496IleMet: 2.496 ± 0.941
4.992IleAsn: 4.992 ± 1.978
4.16IlePro: 4.16 ± 2.087
3.328IleGln: 3.328 ± 0.953
1.664IleArg: 1.664 ± 1.533
4.992IleSer: 4.992 ± 1.486
0.0IleThr: 0.0 ± 0.0
1.664IleVal: 1.664 ± 1.1
1.664IleTrp: 1.664 ± 0.687
4.16IleTyr: 4.16 ± 0.879
0.0IleXaa: 0.0 ± 0.0
Lys
1.664LysAla: 1.664 ± 1.576
1.664LysCys: 1.664 ± 1.533
3.328LysAsp: 3.328 ± 1.318
5.824LysGlu: 5.824 ± 2.693
4.16LysPhe: 4.16 ± 0.931
1.664LysGly: 1.664 ± 1.333
2.496LysHis: 2.496 ± 0.941
3.328LysIle: 3.328 ± 1.318
5.824LysLys: 5.824 ± 2.025
7.488LysLeu: 7.488 ± 1.805
0.832LysMet: 0.832 ± 0.788
1.664LysAsn: 1.664 ± 1.533
2.496LysPro: 2.496 ± 1.65
1.664LysGln: 1.664 ± 0.931
3.328LysArg: 3.328 ± 2.21
3.328LysSer: 3.328 ± 1.318
4.16LysThr: 4.16 ± 0.931
5.824LysVal: 5.824 ± 1.338
0.832LysTrp: 0.832 ± 0.55
5.824LysTyr: 5.824 ± 2.594
0.0LysXaa: 0.0 ± 0.0
Leu
6.656LeuAla: 6.656 ± 1.821
0.832LeuCys: 0.832 ± 0.767
3.328LeuAsp: 3.328 ± 1.154
5.824LeuGlu: 5.824 ± 1.338
0.0LeuPhe: 0.0 ± 0.0
6.656LeuGly: 6.656 ± 1.346
0.832LeuHis: 0.832 ± 0.55
4.16LeuIle: 4.16 ± 0.938
2.496LeuLys: 2.496 ± 1.372
9.151LeuLeu: 9.151 ± 3.704
4.16LeuMet: 4.16 ± 0.986
2.496LeuAsn: 2.496 ± 1.372
7.488LeuPro: 7.488 ± 1.399
8.319LeuGln: 8.319 ± 3.106
7.488LeuArg: 7.488 ± 1.03
8.319LeuSer: 8.319 ± 1.756
3.328LeuThr: 3.328 ± 1.318
1.664LeuVal: 1.664 ± 0.687
0.832LeuTrp: 0.832 ± 0.788
1.664LeuTyr: 1.664 ± 1.1
0.0LeuXaa: 0.0 ± 0.0
Met
0.832MetAla: 0.832 ± 0.788
0.0MetCys: 0.0 ± 0.0
3.328MetAsp: 3.328 ± 1.154
2.496MetGlu: 2.496 ± 1.856
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.832MetHis: 0.832 ± 0.55
2.496MetIle: 2.496 ± 1.129
3.328MetLys: 3.328 ± 1.108
4.16MetLeu: 4.16 ± 0.938
1.664MetMet: 1.664 ± 1.576
0.0MetAsn: 0.0 ± 0.0
0.832MetPro: 0.832 ± 0.55
1.664MetGln: 1.664 ± 1.093
0.832MetArg: 0.832 ± 0.788
5.824MetSer: 5.824 ± 1.338
0.832MetThr: 0.832 ± 0.788
0.832MetVal: 0.832 ± 0.788
0.0MetTrp: 0.0 ± 0.0
1.664MetTyr: 1.664 ± 0.931
0.0MetXaa: 0.0 ± 0.0
Asn
5.824AsnAla: 5.824 ± 2.352
1.664AsnCys: 1.664 ± 0.659
5.824AsnAsp: 5.824 ± 2.682
3.328AsnGlu: 3.328 ± 1.154
1.664AsnPhe: 1.664 ± 1.533
0.0AsnGly: 0.0 ± 0.0
0.832AsnHis: 0.832 ± 0.767
4.992AsnIle: 4.992 ± 2.556
4.16AsnLys: 4.16 ± 2.427
4.992AsnLeu: 4.992 ± 1.926
1.664AsnMet: 1.664 ± 0.931
2.496AsnAsn: 2.496 ± 1.32
2.496AsnPro: 2.496 ± 1.513
4.16AsnGln: 4.16 ± 2.021
3.328AsnArg: 3.328 ± 0.512
4.16AsnSer: 4.16 ± 0.879
1.664AsnThr: 1.664 ± 0.687
0.0AsnVal: 0.0 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
2.496AsnTyr: 2.496 ± 1.545
0.0AsnXaa: 0.0 ± 0.0
Pro
0.832ProAla: 0.832 ± 0.767
1.664ProCys: 1.664 ± 1.533
1.664ProAsp: 1.664 ± 1.374
3.328ProGlu: 3.328 ± 1.394
3.328ProPhe: 3.328 ± 2.201
0.832ProGly: 0.832 ± 0.55
1.664ProHis: 1.664 ± 0.931
6.656ProIle: 6.656 ± 1.643
3.328ProLys: 3.328 ± 1.394
2.496ProLeu: 2.496 ± 2.364
0.832ProMet: 0.832 ± 0.55
2.496ProAsn: 2.496 ± 0.512
0.832ProPro: 0.832 ± 0.788
3.328ProGln: 3.328 ± 1.41
3.328ProArg: 3.328 ± 1.394
4.992ProSer: 4.992 ± 2.061
1.664ProThr: 1.664 ± 0.687
2.496ProVal: 2.496 ± 0.941
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.664GlnAla: 1.664 ± 1.576
0.832GlnCys: 0.832 ± 1.163
2.496GlnAsp: 2.496 ± 1.856
4.16GlnGlu: 4.16 ± 1.35
1.664GlnPhe: 1.664 ± 0.687
4.992GlnGly: 4.992 ± 3.301
0.832GlnHis: 0.832 ± 0.788
4.16GlnIle: 4.16 ± 1.335
4.992GlnLys: 4.992 ± 2.56
3.328GlnLeu: 3.328 ± 1.154
4.16GlnMet: 4.16 ± 2.903
5.824GlnAsn: 5.824 ± 2.416
3.328GlnPro: 3.328 ± 2.201
0.832GlnGln: 0.832 ± 0.55
1.664GlnArg: 1.664 ± 1.1
3.328GlnSer: 3.328 ± 2.201
4.992GlnThr: 4.992 ± 2.061
0.832GlnVal: 0.832 ± 0.788
0.0GlnTrp: 0.0 ± 0.0
2.496GlnTyr: 2.496 ± 1.129
0.0GlnXaa: 0.0 ± 0.0
Arg
2.496ArgAla: 2.496 ± 0.963
0.0ArgCys: 0.0 ± 0.0
2.496ArgAsp: 2.496 ± 0.963
4.992ArgGlu: 4.992 ± 2.922
1.664ArgPhe: 1.664 ± 1.374
2.496ArgGly: 2.496 ± 1.282
0.832ArgHis: 0.832 ± 0.767
0.832ArgIle: 0.832 ± 0.767
4.992ArgLys: 4.992 ± 1.442
6.656ArgLeu: 6.656 ± 2.453
0.0ArgMet: 0.0 ± 0.0
1.664ArgAsn: 1.664 ± 1.533
3.328ArgPro: 3.328 ± 1.108
0.0ArgGln: 0.0 ± 0.0
2.496ArgArg: 2.496 ± 1.32
5.824ArgSer: 5.824 ± 1.159
0.832ArgThr: 0.832 ± 0.55
0.0ArgVal: 0.0 ± 0.0
0.832ArgTrp: 0.832 ± 0.767
4.16ArgTyr: 4.16 ± 0.931
0.0ArgXaa: 0.0 ± 0.0
Ser
7.488SerAla: 7.488 ± 2.2
0.832SerCys: 0.832 ± 0.767
7.488SerAsp: 7.488 ± 3.316
8.319SerGlu: 8.319 ± 1.865
4.992SerPhe: 4.992 ± 2.259
3.328SerGly: 3.328 ± 1.41
0.0SerHis: 0.0 ± 0.0
4.992SerIle: 4.992 ± 2.435
5.824SerLys: 5.824 ± 1.547
6.656SerLeu: 6.656 ± 1.657
3.328SerMet: 3.328 ± 2.326
3.328SerAsn: 3.328 ± 1.41
3.328SerPro: 3.328 ± 1.154
6.656SerGln: 6.656 ± 1.332
4.16SerArg: 4.16 ± 1.366
9.983SerSer: 9.983 ± 2.19
3.328SerThr: 3.328 ± 1.394
4.992SerVal: 4.992 ± 1.827
2.496SerTrp: 2.496 ± 0.512
2.496SerTyr: 2.496 ± 1.282
0.0SerXaa: 0.0 ± 0.0
Thr
1.664ThrAla: 1.664 ± 1.1
0.0ThrCys: 0.0 ± 0.0
2.496ThrAsp: 2.496 ± 1.282
4.992ThrGlu: 4.992 ± 1.724
0.0ThrPhe: 0.0 ± 0.0
2.496ThrGly: 2.496 ± 0.963
0.832ThrHis: 0.832 ± 0.767
0.832ThrIle: 0.832 ± 0.767
1.664ThrLys: 1.664 ± 0.659
5.824ThrLeu: 5.824 ± 0.772
2.496ThrMet: 2.496 ± 1.372
4.16ThrAsn: 4.16 ± 2.393
2.496ThrPro: 2.496 ± 0.963
2.496ThrGln: 2.496 ± 0.963
1.664ThrArg: 1.664 ± 1.1
6.656ThrSer: 6.656 ± 2.52
0.832ThrThr: 0.832 ± 0.55
0.832ThrVal: 0.832 ± 0.767
0.0ThrTrp: 0.0 ± 0.0
1.664ThrTyr: 1.664 ± 0.931
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
0.832ValCys: 0.832 ± 0.767
3.328ValAsp: 3.328 ± 2.138
0.832ValGlu: 0.832 ± 0.788
0.832ValPhe: 0.832 ± 0.55
3.328ValGly: 3.328 ± 0.512
2.496ValHis: 2.496 ± 0.941
2.496ValIle: 2.496 ± 1.282
2.496ValLys: 2.496 ± 0.941
0.832ValLeu: 0.832 ± 0.55
1.664ValMet: 1.664 ± 1.093
4.16ValAsn: 4.16 ± 0.938
5.824ValPro: 5.824 ± 2.187
1.664ValGln: 1.664 ± 1.333
2.496ValArg: 2.496 ± 0.963
4.16ValSer: 4.16 ± 0.879
5.824ValThr: 5.824 ± 1.931
0.832ValVal: 0.832 ± 0.55
0.0ValTrp: 0.0 ± 0.0
1.664ValTyr: 1.664 ± 1.576
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.832TrpGlu: 0.832 ± 0.55
0.832TrpPhe: 0.832 ± 0.55
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
2.496TrpLys: 2.496 ± 0.941
1.664TrpLeu: 1.664 ± 0.687
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.832TrpPro: 0.832 ± 0.55
0.0TrpGln: 0.0 ± 0.0
0.832TrpArg: 0.832 ± 0.788
0.0TrpSer: 0.0 ± 0.0
1.664TrpThr: 1.664 ± 1.1
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
2.496TrpTyr: 2.496 ± 1.513
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.496TyrAla: 2.496 ± 0.512
2.496TyrCys: 2.496 ± 1.32
4.16TyrAsp: 4.16 ± 1.398
2.496TyrGlu: 2.496 ± 2.375
2.496TyrPhe: 2.496 ± 1.65
3.328TyrGly: 3.328 ± 1.394
1.664TyrHis: 1.664 ± 1.533
4.16TyrIle: 4.16 ± 1.529
3.328TyrLys: 3.328 ± 0.512
6.656TyrLeu: 6.656 ± 1.565
0.0TyrMet: 0.0 ± 0.0
6.656TyrAsn: 6.656 ± 1.346
0.832TyrPro: 0.832 ± 0.767
4.16TyrGln: 4.16 ± 3.026
1.664TyrArg: 1.664 ± 0.931
4.992TyrSer: 4.992 ± 1.978
0.0TyrThr: 0.0 ± 0.0
0.832TyrVal: 0.832 ± 1.163
0.832TyrTrp: 0.832 ± 0.55
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1203 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski