Candidatus Methylopumilus turicensis
Average proteome isoelectric point is 6.59
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 1739 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|A0A0B7IVB6|A0A0B7IVB6_9PROT Uncharacterized protein OS=Candidatus Methylopumilus turicensis OX=1581680 GN=BN1209_1109 PE=4 SV=1
MM1 pKa = 7.26 ATKK4 pKa = 10.44 KK5 pKa = 10.4 PQDD8 pKa = 4.02 DD9 pKa = 3.95 VTKK12 pKa = 10.76 VPVQQGVDD20 pKa = 3.29 AEE22 pKa = 4.49 STYY25 pKa = 11.22 VAAQTANPDD34 pKa = 3.97 KK35 pKa = 11.09 QWMDD39 pKa = 3.64 DD40 pKa = 3.42 TAKK43 pKa = 10.74 AWDD46 pKa = 3.61 ARR48 pKa = 11.84 KK49 pKa = 9.65 SAEE52 pKa = 4.23 KK53 pKa = 10.58 EE54 pKa = 3.59 NDD56 pKa = 3.37 VVKK59 pKa = 11.23 VEE61 pKa = 4.12 GQAVINLADD70 pKa = 3.35 ATGAVGEE77 pKa = 4.39 KK78 pKa = 9.47 TGAALIVADD87 pKa = 4.16 TANSKK92 pKa = 10.42 DD93 pKa = 3.31 AAVVVKK99 pKa = 10.8 KK100 pKa = 10.73 KK101 pKa = 10.73 DD102 pKa = 3.62 DD103 pKa = 4.21 DD104 pKa = 3.93 SHH106 pKa = 8.06 DD107 pKa = 3.34 KK108 pKa = 11.16 GGYY111 pKa = 7.4 IWGGLGVLGLIGIAAAGGGGGGDD134 pKa = 3.79 SAPAPAPAPLRR145 pKa = 11.84 LDD147 pKa = 3.51 GLVIDD152 pKa = 5.45 DD153 pKa = 4.57 PVANAIVFRR162 pKa = 11.84 DD163 pKa = 4.09 TYY165 pKa = 11.11 GDD167 pKa = 3.99 GYY169 pKa = 10.86 LHH171 pKa = 6.94 VIDD174 pKa = 5.17 AGEE177 pKa = 3.73 GRR179 pKa = 11.84 YY180 pKa = 9.26 IVDD183 pKa = 3.68 PDD185 pKa = 3.36 QSVVVTNALGEE196 pKa = 4.05 FSSLGGSGRR205 pKa = 11.84 IISVGINRR213 pKa = 11.84 LPILVHH219 pKa = 6.85 EE220 pKa = 4.99 DD221 pKa = 3.77 AEE223 pKa = 4.41 DD224 pKa = 3.55 LTPQEE229 pKa = 4.2 MVANEE234 pKa = 4.04 GDD236 pKa = 4.08 LLFASAAKK244 pKa = 9.8 EE245 pKa = 4.04 VANVAINNGDD255 pKa = 3.44 YY256 pKa = 11.39 AFIVGEE262 pKa = 3.96 NQIFDD267 pKa = 4.05 SLVISSGITLSVGGANVTLVTGVTALVDD295 pKa = 4.26 AYY297 pKa = 9.62 IHH299 pKa = 6.94 RR300 pKa = 11.84 YY301 pKa = 8.99 EE302 pKa = 5.28 DD303 pKa = 4.13 DD304 pKa = 3.67 EE305 pKa = 4.48 FVPTNAEE312 pKa = 3.69 VKK314 pKa = 10.25 AAIIEE319 pKa = 4.2 VANLFGYY326 pKa = 9.02 PLNAGSSQQALMSFLLGGYY345 pKa = 9.54 DD346 pKa = 3.45 VAGVNSPDD354 pKa = 3.61 NLNQEE359 pKa = 4.21 IYY361 pKa = 10.79 SIVNSLYY368 pKa = 10.04 ATNEE372 pKa = 3.76 ALNDD376 pKa = 3.95 DD377 pKa = 4.42 QYY379 pKa = 12.2 DD380 pKa = 3.61 AADD383 pKa = 3.41 YY384 pKa = 11.93 SMVFNNALNAIILVQEE400 pKa = 3.75 EE401 pKa = 4.2 RR402 pKa = 11.84 VRR404 pKa = 11.84 NDD406 pKa = 3.38 EE407 pKa = 4.14 EE408 pKa = 5.04 DD409 pKa = 3.84 LASLATPEE417 pKa = 3.91 VFANVTEE424 pKa = 4.39 EE425 pKa = 4.65 FIQLFNQISDD435 pKa = 3.51 NDD437 pKa = 3.31 ISTNEE442 pKa = 3.72 AQLFIDD448 pKa = 4.01 VASNHH453 pKa = 6.25 ANFGGGAADD462 pKa = 2.95 IYY464 pKa = 10.26 EE465 pKa = 4.61 TFDD468 pKa = 3.13 EE469 pKa = 5.25 SYY471 pKa = 9.66 STDD474 pKa = 3.55 DD475 pKa = 3.94 DD476 pKa = 4.25 NLVNMVVGGDD486 pKa = 3.42 QLRR489 pKa = 11.84 EE490 pKa = 3.67 QDD492 pKa = 3.76 VEE494 pKa = 4.51 VVGNITVLAAGTNDD508 pKa = 3.57 SVDD511 pKa = 4.47 LILFGGEE518 pKa = 3.99 DD519 pKa = 3.81 SPVEE523 pKa = 3.82 LMGSNILVSAYY534 pKa = 7.55 GTSSSADD541 pKa = 3.27 LVLAAVNAPGTEE553 pKa = 4.12 MSNGTYY559 pKa = 9.86 TYY561 pKa = 10.58 DD562 pKa = 3.25 ARR564 pKa = 11.84 SDD566 pKa = 3.4 EE567 pKa = 4.42 TVAVGDD573 pKa = 3.65 ITVQATGEE581 pKa = 4.02 DD582 pKa = 4.41 SEE584 pKa = 5.08 SGLYY588 pKa = 9.49 MSADD592 pKa = 3.64 LDD594 pKa = 3.64 IAGDD598 pKa = 3.68 VSITSSGEE606 pKa = 3.66 DD607 pKa = 3.2 SSAVAQMISIAGMAQSAIFEE627 pKa = 4.2 VDD629 pKa = 3.42 LAAIIEE635 pKa = 4.49 DD636 pKa = 3.83 ALTTDD641 pKa = 3.43 RR642 pKa = 11.84 SVIQLVVDD650 pKa = 4.45 GKK652 pKa = 9.09 VLRR655 pKa = 11.84 ANVTEE660 pKa = 4.21 GDD662 pKa = 3.51 TDD664 pKa = 3.59 EE665 pKa = 4.4 VVANIIEE672 pKa = 4.16 QWKK675 pKa = 10.19 LDD677 pKa = 3.53 SDD679 pKa = 4.32 YY680 pKa = 11.29 STLSEE685 pKa = 4.0 NQMEE689 pKa = 4.46 YY690 pKa = 9.21 WGDD693 pKa = 3.37 YY694 pKa = 10.41 ARR696 pKa = 11.84 IRR698 pKa = 11.84 FDD700 pKa = 3.03 NTEE703 pKa = 3.76 SHH705 pKa = 6.15 EE706 pKa = 4.42 VSVSRR711 pKa = 11.84 YY712 pKa = 8.64 NGPIEE717 pKa = 3.91 TDD719 pKa = 3.52 FDD721 pKa = 4.34 VVGTVQDD728 pKa = 3.42 NYY730 pKa = 10.7 EE731 pKa = 3.98 RR732 pKa = 11.84 EE733 pKa = 3.78 AAINFEE739 pKa = 4.13 GSHH742 pKa = 7.49 IEE744 pKa = 4.13 VQALGNNFFNNNGSYY759 pKa = 9.32 DD760 pKa = 3.44 TDD762 pKa = 3.44 AALVVFGATGSINGIDD778 pKa = 4.03 VIAGGNDD785 pKa = 3.13 YY786 pKa = 10.84 FGNYY790 pKa = 10.01 SFDD793 pKa = 3.89 LPNALAIINIDD804 pKa = 3.38 GSVSGEE810 pKa = 3.9 INVTTLEE817 pKa = 4.17 EE818 pKa = 4.41 GASKK822 pKa = 10.0 SAYY825 pKa = 9.32 MLLQATAGEE834 pKa = 4.33 LSLDD838 pKa = 3.52 DD839 pKa = 3.39 VTINVTAAGNNSSADD854 pKa = 3.75 LEE856 pKa = 4.56 IGGDD860 pKa = 4.07 LNNLPIPGFWSTDD873 pKa = 3.25 SVNTLVTGSINGITVSASGDD893 pKa = 3.5 NSDD896 pKa = 4.4 ASLDD900 pKa = 3.43 ISGDD904 pKa = 2.92 ITIRR908 pKa = 11.84 GTILVEE914 pKa = 4.44 TSAEE918 pKa = 3.95 DD919 pKa = 3.49 ANAEE923 pKa = 4.11 LSIDD927 pKa = 4.05 SNFDD931 pKa = 3.29 SSDD934 pKa = 3.54 TLSSSVITFDD944 pKa = 3.52 NVDD947 pKa = 3.91 IIARR951 pKa = 11.84 AYY953 pKa = 10.46 GEE955 pKa = 4.26 SSDD958 pKa = 3.83 VDD960 pKa = 3.23 ISIDD964 pKa = 3.27 GNAYY968 pKa = 10.32 GSINSILLVAHH979 pKa = 7.38 ADD981 pKa = 3.61 GALDD985 pKa = 3.81 GSRR988 pKa = 11.84 NAEE991 pKa = 4.05 SADD994 pKa = 3.62 LNVDD998 pKa = 3.08 INFNGTVGDD1007 pKa = 3.59 ITLQAMGNSDD1017 pKa = 5.66 DD1018 pKa = 4.71 VDD1020 pKa = 5.32 LDD1022 pKa = 3.35 MDD1024 pKa = 4.37 ASSNRR1029 pKa = 11.84 SNGDD1033 pKa = 2.92 EE1034 pKa = 4.07 VQFYY1038 pKa = 11.19 DD1039 pKa = 4.15 LGQMMSYY1046 pKa = 10.72 DD1047 pKa = 4.32 SSWQDD1052 pKa = 3.37 LQTGDD1057 pKa = 5.17 LISLTIGDD1065 pKa = 4.26 VVLTATVGQDD1075 pKa = 3.07 VNDD1078 pKa = 4.55 DD1079 pKa = 3.52 YY1080 pKa = 11.52 GTAVEE1085 pKa = 4.31 VLADD1089 pKa = 3.81 VVSQLQDD1096 pKa = 2.99 AVDD1099 pKa = 3.82 ARR1101 pKa = 11.84 NVDD1104 pKa = 3.7 PDD1106 pKa = 4.04 LSDD1109 pKa = 3.99 LNVVIKK1115 pKa = 8.66 QTGNTNYY1122 pKa = 9.92 FDD1124 pKa = 3.9 NYY1126 pKa = 10.42 YY1127 pKa = 10.26 GADD1130 pKa = 4.39 GIWVRR1135 pKa = 11.84 WLDD1138 pKa = 3.67 AGEE1141 pKa = 4.17 QEE1143 pKa = 4.28 ATSLNVDD1150 pKa = 3.5 GDD1152 pKa = 4.02 IVSPTDD1158 pKa = 3.25 RR1159 pKa = 11.84 EE1160 pKa = 4.35 YY1161 pKa = 11.68 GNDD1164 pKa = 3.34 MPTSIEE1170 pKa = 3.99 FLDD1173 pKa = 3.93 SNILIEE1179 pKa = 4.17 AHH1181 pKa = 6.46 GEE1183 pKa = 4.08 SSDD1186 pKa = 4.41 ASLDD1190 pKa = 3.74 VNDD1193 pKa = 3.4 ATGRR1197 pKa = 11.84 INSLTLIATDD1207 pKa = 3.98 EE1208 pKa = 4.46 NGGSADD1214 pKa = 3.13 VDD1216 pKa = 3.55 ADD1218 pKa = 3.55 IEE1220 pKa = 4.4 LGGRR1224 pKa = 11.84 LGDD1227 pKa = 3.61 VTITADD1233 pKa = 3.76 GYY1235 pKa = 8.51 NTEE1238 pKa = 4.68 AQVEE1242 pKa = 4.52 MNSAPEE1248 pKa = 3.9 GLTYY1252 pKa = 10.91 DD1253 pKa = 3.95 NSIITLNALGDD1264 pKa = 4.05 SADD1267 pKa = 3.66 VEE1269 pKa = 4.61 YY1270 pKa = 10.69 HH1271 pKa = 5.78 QEE1273 pKa = 4.08 DD1274 pKa = 4.47 YY1275 pKa = 11.53 GQGTIDD1281 pKa = 3.55 SLNINVIGNNYY1292 pKa = 9.78 ADD1294 pKa = 4.14 ADD1296 pKa = 4.23 VIIGGDD1302 pKa = 3.02 ITFDD1306 pKa = 4.11 SEE1308 pKa = 3.93 INLYY1312 pKa = 10.27 ARR1314 pKa = 11.84 NTEE1317 pKa = 3.87 SSDD1320 pKa = 3.21 GVNIYY1325 pKa = 8.64 MHH1327 pKa = 7.32 LANEE1331 pKa = 4.32 DD1332 pKa = 3.46 RR1333 pKa = 11.84 DD1334 pKa = 4.18 DD1335 pKa = 4.0 GMNSTFHH1342 pKa = 6.44 MNDD1345 pKa = 2.41 VTINVEE1351 pKa = 4.24 SVGYY1355 pKa = 8.95 NARR1358 pKa = 11.84 AEE1360 pKa = 4.18 ITTQNYY1366 pKa = 9.22 AHH1368 pKa = 7.12 TDD1370 pKa = 3.18 GDD1372 pKa = 4.02 FSSDD1376 pKa = 3.19 SSIDD1380 pKa = 3.39 STITGTINALNVSAGVYY1397 pKa = 10.16 DD1398 pKa = 5.25 DD1399 pKa = 4.58 SNEE1402 pKa = 4.49 SINPTMVANAEE1413 pKa = 4.2 SSVDD1417 pKa = 3.95 LNVHH1421 pKa = 6.63 GIIEE1425 pKa = 4.99 SITLVADD1432 pKa = 3.5 NVSEE1436 pKa = 4.23 VSVDD1440 pKa = 3.45 LFGAINANGVMDD1452 pKa = 3.65 ITITNSNSSSISLDD1466 pKa = 3.33 LYY1468 pKa = 11.08 DD1469 pKa = 3.75 VYY1471 pKa = 11.69 GDD1473 pKa = 3.83 IEE1475 pKa = 5.0 TITSNSGSEE1484 pKa = 4.01 GAEE1487 pKa = 3.76 TNIYY1491 pKa = 10.46 VSTEE1495 pKa = 3.68 GSIQTVNLTTTQDD1508 pKa = 3.4 AEE1510 pKa = 4.65 TVASFDD1516 pKa = 3.82 INGSQHH1522 pKa = 6.56 YY1523 pKa = 8.96 INNMTITTVGTSFFGDD1539 pKa = 3.63 YY1540 pKa = 10.52 TSVSDD1545 pKa = 4.75 VIVDD1549 pKa = 3.69 QEE1551 pKa = 4.08 AHH1553 pKa = 6.09 GGVVNIVNGTSNGDD1567 pKa = 3.59 LLADD1571 pKa = 3.87 TRR1573 pKa = 11.84 LSYY1576 pKa = 10.57 YY1577 pKa = 11.02 GNYY1580 pKa = 9.05 QADD1583 pKa = 4.3 SIVIAANNNDD1593 pKa = 3.42 GAGDD1597 pKa = 3.72 EE1598 pKa = 4.43 FALHH1602 pKa = 6.81 ISMDD1606 pKa = 3.93 DD1607 pKa = 3.17 VDD1609 pKa = 4.88 VYY1611 pKa = 10.63 STQHH1615 pKa = 4.36 QTALVNNMTSITGLVNGYY1633 pKa = 10.41 DD1634 pKa = 3.37 NPTNNFIQFADD1645 pKa = 4.65 LEE1647 pKa = 5.07 DD1648 pKa = 4.95 DD1649 pKa = 4.42 DD1650 pKa = 4.4 YY1651 pKa = 11.66 TYY1653 pKa = 11.38 EE1654 pKa = 4.38 PGANGRR1660 pKa = 11.84 QGPIDD1665 pKa = 4.55 LNISHH1670 pKa = 6.84 YY1671 pKa = 11.49 SNGLDD1676 pKa = 3.07 GWVGGDD1682 pKa = 3.67 TYY1684 pKa = 11.4 FDD1686 pKa = 4.83 DD1687 pKa = 5.32 YY1688 pKa = 11.52 EE1689 pKa = 5.04 GSQNIGNGFYY1699 pKa = 11.04 GSFNEE1704 pKa = 5.12 FFDD1707 pKa = 3.82 AAQFGIASEE1716 pKa = 4.39 YY1717 pKa = 11.32 AFVEE1721 pKa = 4.46 LSQYY1725 pKa = 9.89 GAAGHH1730 pKa = 7.01 DD1731 pKa = 4.05 GYY1733 pKa = 11.44 DD1734 pKa = 3.24 FGFDD1738 pKa = 2.84 TDD1740 pKa = 3.66 VYY1742 pKa = 11.41 LNVSWVDD1749 pKa = 3.43 KK1750 pKa = 10.91 NGNSQTIYY1758 pKa = 11.05 LNADD1762 pKa = 3.47 LGGSSLGGSLAGDD1775 pKa = 3.65 ATAVVNGLNADD1786 pKa = 4.01 TDD1788 pKa = 3.72 WDD1790 pKa = 4.01 GTPTGSLDD1798 pKa = 3.71 GSDD1801 pKa = 4.26 GRR1803 pKa = 11.84 WDD1805 pKa = 3.25 SWDD1808 pKa = 3.42 NNLTVFANDD1817 pKa = 3.34 SNTLGIRR1824 pKa = 11.84 IGEE1827 pKa = 4.27 GYY1829 pKa = 7.54 ITNVSFHH1836 pKa = 6.9 SDD1838 pKa = 2.58 WVEE1841 pKa = 3.79 VDD1843 pKa = 5.01 DD1844 pKa = 6.05 LVNDD1848 pKa = 3.64 YY1849 pKa = 10.9 TNIGSSDD1856 pKa = 3.13 ASQSKK1861 pKa = 10.62 GYY1863 pKa = 9.29 TSLNDD1868 pKa = 3.2 YY1869 pKa = 11.7 ANFEE1873 pKa = 4.13 EE1874 pKa = 5.24 SSIQFVEE1881 pKa = 4.09 GGGYY1885 pKa = 9.81 FFGMVLNEE1893 pKa = 4.29 DD1894 pKa = 3.57 QNSYY1898 pKa = 10.83 RR1899 pKa = 11.84 GVLAMDD1905 pKa = 3.89 EE1906 pKa = 4.54 DD1907 pKa = 5.01 GEE1909 pKa = 4.82 GVTKK1913 pKa = 10.76 LIEE1916 pKa = 4.29 LVDD1919 pKa = 4.04 VYY1921 pKa = 11.56 ASYY1924 pKa = 11.9 NDD1926 pKa = 2.72 VDD1928 pKa = 3.94 YY1929 pKa = 11.49 YY1930 pKa = 11.55 LNEE1933 pKa = 3.96 GDD1935 pKa = 5.11 ADD1937 pKa = 3.44 HH1938 pKa = 7.27 GYY1940 pKa = 11.21 NDD1942 pKa = 4.15 FSSAYY1947 pKa = 9.68 IGMGYY1952 pKa = 10.31 GNEE1955 pKa = 4.19 GGGFAGYY1962 pKa = 10.34 AGSTGFDD1969 pKa = 3.66 YY1970 pKa = 8.1 EE1971 pKa = 4.55 TNADD1975 pKa = 3.18 NYY1977 pKa = 11.19 AFVVV1981 pKa = 3.57
Molecular weight: 209.9 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 3.837
IPC2_protein 3.427
IPC_protein 3.503
Toseland 3.261
ProMoST 3.668
Dawson 3.503
Bjellqvist 3.656
Wikipedia 3.452
Rodwell 3.312
Grimsley 3.16
Solomon 3.503
Lehninger 3.452
Nozaki 3.605
DTASelect 3.884
Thurlkill 3.312
EMBOSS 3.452
Sillero 3.617
Patrickios 0.464
IPC_peptide 3.49
IPC2_peptide 3.592
IPC2.peptide.svr19 3.644
Protein with the highest isoelectric point:
>tr|A0A0B7IY23|A0A0B7IY23_9PROT XRE family transcriptional regulator OS=Candidatus Methylopumilus turicensis OX=1581680 GN=BN1209_0365 PE=4 SV=1
MM1 pKa = 7.54 ALIKK5 pKa = 10.15 VKK7 pKa = 8.97 PTSPGRR13 pKa = 11.84 RR14 pKa = 11.84 AVVKK18 pKa = 10.45 VVTPDD23 pKa = 3.35 LYY25 pKa = 10.83 KK26 pKa = 10.79 GKK28 pKa = 9.5 PYY30 pKa = 11.01 APLLEE35 pKa = 4.52 KK36 pKa = 10.46 QSKK39 pKa = 8.96 NAGRR43 pKa = 11.84 NNNGHH48 pKa = 5.15 ITIRR52 pKa = 11.84 HH53 pKa = 5.01 QGGGHH58 pKa = 5.1 KK59 pKa = 8.87 QHH61 pKa = 6.13 YY62 pKa = 9.02 RR63 pKa = 11.84 LVDD66 pKa = 3.89 FRR68 pKa = 11.84 RR69 pKa = 11.84 NKK71 pKa = 10.58 DD72 pKa = 3.41 GIPAKK77 pKa = 10.41 VEE79 pKa = 4.18 HH80 pKa = 6.97 IEE82 pKa = 3.9 YY83 pKa = 10.62 DD84 pKa = 3.75 PNRR87 pKa = 11.84 SAHH90 pKa = 6.51 IALLCYY96 pKa = 10.35 ADD98 pKa = 3.41 GEE100 pKa = 4.27 RR101 pKa = 11.84 RR102 pKa = 11.84 YY103 pKa = 10.13 IIAPRR108 pKa = 11.84 GVAAGAQLISGSDD121 pKa = 3.44 APIKK125 pKa = 10.53 VGNALPLRR133 pKa = 11.84 NIPVGSTIHH142 pKa = 6.89 CIEE145 pKa = 4.24 LQPGKK150 pKa = 10.25 GAQLARR156 pKa = 11.84 SAGTSVQLLARR167 pKa = 11.84 EE168 pKa = 4.17 GSYY171 pKa = 10.98 AQLRR175 pKa = 11.84 LRR177 pKa = 11.84 SGEE180 pKa = 3.81 VRR182 pKa = 11.84 RR183 pKa = 11.84 VHH185 pKa = 6.63 VDD187 pKa = 3.58 CKK189 pKa = 10.37 ATLGEE194 pKa = 4.38 VGNEE198 pKa = 3.83 EE199 pKa = 3.77 HH200 pKa = 6.9 SLRR203 pKa = 11.84 SIGKK207 pKa = 8.64 AGAMRR212 pKa = 11.84 WRR214 pKa = 11.84 GVRR217 pKa = 11.84 PTVRR221 pKa = 11.84 GVVMNPVDD229 pKa = 3.77 HH230 pKa = 6.67 PHH232 pKa = 6.77 GGGEE236 pKa = 4.36 GKK238 pKa = 7.89 TAAGMNPVSPWGTPTKK254 pKa = 10.48 GYY256 pKa = 7.67 RR257 pKa = 11.84 TRR259 pKa = 11.84 SNKK262 pKa = 8.78 RR263 pKa = 11.84 TDD265 pKa = 2.85 NMRR268 pKa = 11.84 VSRR271 pKa = 11.84 RR272 pKa = 11.84 PANKK276 pKa = 9.73 RR277 pKa = 3.2
Molecular weight: 30.16 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.328
IPC2_protein 9.867
IPC_protein 10.804
Toseland 10.965
ProMoST 10.906
Dawson 11.038
Bjellqvist 10.789
Wikipedia 11.286
Rodwell 11.213
Grimsley 11.082
Solomon 11.213
Lehninger 11.169
Nozaki 10.95
DTASelect 10.774
Thurlkill 10.95
EMBOSS 11.389
Sillero 10.979
Patrickios 10.921
IPC_peptide 11.228
IPC2_peptide 9.838
IPC2.peptide.svr19 8.575
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
1739
0
1739
534910
37
2061
307.6
33.95
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
9.883 ± 0.067
0.902 ± 0.019
5.362 ± 0.045
5.835 ± 0.054
4.003 ± 0.046
7.043 ± 0.063
2.325 ± 0.026
6.421 ± 0.045
5.73 ± 0.059
10.344 ± 0.065
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.766 ± 0.025
4.144 ± 0.046
4.126 ± 0.032
4.138 ± 0.038
4.705 ± 0.048
6.102 ± 0.055
5.2 ± 0.04
7.04 ± 0.048
1.156 ± 0.022
2.776 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here