Apple green crinkle associated virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; unclassified Foveavirus

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K0M7W4|K0M7W4_9VIRU Movement protein TGB2 OS=Apple green crinkle associated virus OX=1211388 GN=TGB-2 PE=3 SV=1
MM1 pKa = 6.96EE2 pKa = 4.71TVLSLLNEE10 pKa = 4.49FGFEE14 pKa = 3.91RR15 pKa = 11.84TVEE18 pKa = 4.05PLSDD22 pKa = 4.94PIVVHH27 pKa = 6.55AVPGSGKK34 pKa = 7.26TTLIKK39 pKa = 10.32QALLRR44 pKa = 11.84NHH46 pKa = 6.73NIEE49 pKa = 3.94AVTFGVPEE57 pKa = 3.99KK58 pKa = 11.17ANIHH62 pKa = 4.48GTYY65 pKa = 9.33IKK67 pKa = 10.43KK68 pKa = 10.18ARR70 pKa = 11.84QGQRR74 pKa = 11.84GRR76 pKa = 11.84GNFSILDD83 pKa = 3.72EE84 pKa = 4.39YY85 pKa = 11.62LSGEE89 pKa = 4.15YY90 pKa = 9.06STGFNCLFSDD100 pKa = 5.21PYY102 pKa = 10.8QNHH105 pKa = 6.32GDD107 pKa = 3.82CLRR110 pKa = 11.84AHH112 pKa = 7.05FIGRR116 pKa = 11.84CSHH119 pKa = 6.71RR120 pKa = 11.84FGNQTVQLLQGLGYY134 pKa = 10.58NIASSKK140 pKa = 10.06QDD142 pKa = 2.73IVEE145 pKa = 4.22RR146 pKa = 11.84KK147 pKa = 10.26NIFQLVDD154 pKa = 3.38PEE156 pKa = 4.41GVIICLEE163 pKa = 3.91EE164 pKa = 4.15SVEE167 pKa = 5.95DD168 pKa = 3.84FLKK171 pKa = 9.77WHH173 pKa = 5.32SVEE176 pKa = 4.66YY177 pKa = 10.58KK178 pKa = 10.51LPCQVRR184 pKa = 11.84GATYY188 pKa = 10.22DD189 pKa = 2.86IVTFIHH195 pKa = 6.51EE196 pKa = 4.52KK197 pKa = 9.96PLEE200 pKa = 4.12EE201 pKa = 4.75LVSPDD206 pKa = 3.79LFVALTRR213 pKa = 11.84HH214 pKa = 4.74KK215 pKa = 9.34TKK217 pKa = 10.8LVLVTNN223 pKa = 4.96

Molecular weight: 25.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K0M866|K0M866_9VIRU Movement protein TGBp3 OS=Apple green crinkle associated virus OX=1211388 GN=TGB-3 PE=3 SV=1
MM1 pKa = 7.24FLKK4 pKa = 10.62SGLGLAIAAASAAYY18 pKa = 9.83LVLLLAQQLLMNSQKK33 pKa = 10.36QCTIVITGEE42 pKa = 4.01SVSIVGCVYY51 pKa = 10.63SDD53 pKa = 3.74AFIEE57 pKa = 4.21LVKK60 pKa = 10.67GLKK63 pKa = 9.64PYY65 pKa = 9.38YY66 pKa = 10.08HH67 pKa = 7.57PLGG70 pKa = 4.07

Molecular weight: 7.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2999

70

2183

599.8

67.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.169 ± 0.921

2.401 ± 0.466

4.968 ± 1.198

6.435 ± 0.675

6.069 ± 0.935

6.736 ± 0.749

2.834 ± 0.432

6.335 ± 0.35

6.235 ± 1.278

9.637 ± 1.59

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.034 ± 0.443

4.168 ± 0.272

4.635 ± 1.187

3.434 ± 1.202

4.968 ± 0.575

8.036 ± 1.019

5.035 ± 0.671

6.469 ± 0.896

0.9 ± 0.245

2.501 ± 0.485
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski