Plasmodium vivax (strain Salvador I)

Taxonomy: cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium); Plasmodium vivax

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5389 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A5KBW1|A5KBW1_PLAVS Uncharacterized protein OS=Plasmodium vivax (strain Salvador I) OX=126793 GN=PVX_002725 PE=4 SV=1
MM1 pKa = 7.17KK2 pKa = 10.15VAYY5 pKa = 9.21FLSVLDD11 pKa = 3.94LLIIFSLYY19 pKa = 9.97FDD21 pKa = 3.85GRR23 pKa = 11.84RR24 pKa = 11.84SAFAGIAACIRR35 pKa = 11.84HH36 pKa = 5.14GRR38 pKa = 11.84ILGEE42 pKa = 4.35GGEE45 pKa = 4.3QSGGASGGSSGGSSGDD61 pKa = 3.33SSGGLSGGSSGGPSPPAGSSGSGGSDD87 pKa = 3.17PANSATGPQNSTPGSGGQTGDD108 pKa = 3.42HH109 pKa = 6.15SAEE112 pKa = 4.36AEE114 pKa = 3.86NGDD117 pKa = 4.12YY118 pKa = 11.22NEE120 pKa = 4.69QGDD123 pKa = 4.6DD124 pKa = 3.69HH125 pKa = 8.55GDD127 pKa = 3.53DD128 pKa = 4.42HH129 pKa = 8.99GDD131 pKa = 3.66DD132 pKa = 4.44HH133 pKa = 8.99GDD135 pKa = 3.66DD136 pKa = 4.44HH137 pKa = 8.99GDD139 pKa = 3.66DD140 pKa = 4.44HH141 pKa = 8.99GDD143 pKa = 3.66DD144 pKa = 4.44HH145 pKa = 8.99GDD147 pKa = 3.66DD148 pKa = 4.44HH149 pKa = 8.99GDD151 pKa = 3.66DD152 pKa = 4.44HH153 pKa = 8.95GDD155 pKa = 3.55DD156 pKa = 4.7HH157 pKa = 9.44GDD159 pKa = 3.53EE160 pKa = 4.47QDD162 pKa = 4.19GEE164 pKa = 4.63DD165 pKa = 4.14YY166 pKa = 11.46DD167 pKa = 5.29DD168 pKa = 6.22AEE170 pKa = 6.43DD171 pKa = 4.75DD172 pKa = 4.33DD173 pKa = 6.06LYY175 pKa = 11.42EE176 pKa = 4.64LSEE179 pKa = 4.04VDD181 pKa = 4.52EE182 pKa = 4.48NANLCLDD189 pKa = 3.89NNGGCGDD196 pKa = 4.83DD197 pKa = 5.18KK198 pKa = 11.16ICEE201 pKa = 4.06NLGKK205 pKa = 10.83GIVKK209 pKa = 8.79CLCKK213 pKa = 10.07PGYY216 pKa = 9.93KK217 pKa = 10.11LVGTEE222 pKa = 4.31CVEE225 pKa = 4.27SSKK228 pKa = 11.15SSSLNSFFCWFLLVIIVLASINN250 pKa = 3.49

Molecular weight: 25.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A5K5U9|A5K5U9_PLAVS WD domain G-beta repeat domain containing protein OS=Plasmodium vivax (strain Salvador I) OX=126793 GN=PVX_089605 PE=4 SV=1
MM1 pKa = 7.33VLLKK5 pKa = 10.69KK6 pKa = 10.46KK7 pKa = 10.52LLLRR11 pKa = 11.84KK12 pKa = 9.14PLLKK16 pKa = 10.45RR17 pKa = 11.84LLRR20 pKa = 11.84KK21 pKa = 9.29PLLKK25 pKa = 10.45RR26 pKa = 11.84LLRR29 pKa = 11.84KK30 pKa = 9.29PLLKK34 pKa = 10.5RR35 pKa = 11.84LLKK38 pKa = 10.61KK39 pKa = 10.4LLKK42 pKa = 10.17NVPKK46 pKa = 10.45KK47 pKa = 10.56RR48 pKa = 11.84SLL50 pKa = 3.41

Molecular weight: 6.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5389

0

5389

3748164

39

11429

695.5

78.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.261 ± 0.031

1.84 ± 0.014

5.48 ± 0.026

7.71 ± 0.048

4.267 ± 0.029

6.594 ± 0.046

2.716 ± 0.016

5.595 ± 0.035

9.015 ± 0.038

8.214 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.017 ± 0.013

7.244 ± 0.039

3.608 ± 0.025

3.277 ± 0.018

4.901 ± 0.032

8.076 ± 0.032

4.3 ± 0.018

5.244 ± 0.022

0.619 ± 0.007

4.018 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski