Chytriomyces confervae

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Chytridiomycota; Chytridiomycota incertae sedis; Chytridiomycetes; Chytridiales; Chytriomycetaceae; Chytriomyces

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10661 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A507FKB3|A0A507FKB3_9FUNG NTP_transf_2 domain-containing protein OS=Chytriomyces confervae OX=246404 GN=CcCBS67573_g02879 PE=4 SV=1
MM1 pKa = 7.28FATSANLDD9 pKa = 3.87TRR11 pKa = 11.84PSAPDD16 pKa = 3.34SPSEE20 pKa = 3.86QASVKK25 pKa = 9.84TSFGSYY31 pKa = 9.73IIRR34 pKa = 11.84DD35 pKa = 3.6VRR37 pKa = 11.84FVIATACDD45 pKa = 3.59ISPGPSTKK53 pKa = 10.1NRR55 pKa = 11.84LILPKK60 pKa = 9.21PASVFYY66 pKa = 11.19SPITTCITLYY76 pKa = 9.66GTTHH80 pKa = 6.61PRR82 pKa = 11.84SKK84 pKa = 11.1NLLLEE89 pKa = 4.3MIFNKK94 pKa = 9.92IVATAILFAYY104 pKa = 10.32ASIAFPANIAPPSEE118 pKa = 4.28VAPGGAGTSIPSAEE132 pKa = 4.18PQEE135 pKa = 4.04ITPTSFAPVPSPLLDD150 pKa = 3.35TAFPPVANDD159 pKa = 3.22INGLCGGGSAFKK171 pKa = 10.99NPLACKK177 pKa = 9.86PGLVCAKK184 pKa = 10.12QVGSSDD190 pKa = 3.79DD191 pKa = 3.63TLGTCQIPNVSDD203 pKa = 3.25VGGSCGGEE211 pKa = 3.96VFNAATCAVGLVCISDD227 pKa = 3.84AADD230 pKa = 3.11ATAPGTCQIVVATPTPTSEE249 pKa = 3.92PVGLGGLVTGTEE261 pKa = 4.2EE262 pKa = 4.14VVATGGIVGTEE273 pKa = 3.82PVGTPSEE280 pKa = 4.42TVAGGGIVGTEE291 pKa = 3.91LVEE294 pKa = 3.89PTIAATSEE302 pKa = 4.38TTVSAPVPSSTTTTSKK318 pKa = 7.98TTTTSTASSIVSTVFGEE335 pKa = 4.27NFPPALTSFTTTSEE349 pKa = 3.86EE350 pKa = 3.98LAPPSPSNGAASVLPTLGTEE370 pKa = 4.08PAEE373 pKa = 4.36PPTPSVAPAGTEE385 pKa = 3.91PVTEE389 pKa = 4.43TPSPAGPSTPTEE401 pKa = 4.25APASSTTSEE410 pKa = 4.3EE411 pKa = 4.28APPTPSNPAAGTQPVPEE428 pKa = 4.74PSSTSATTATSEE440 pKa = 4.63EE441 pKa = 4.34IPPTPSIGEE450 pKa = 4.28AEE452 pKa = 4.3TEE454 pKa = 4.22TLDD457 pKa = 3.81EE458 pKa = 4.34LTISPLTGNPPTLPTTTTSEE478 pKa = 4.2GAPPSPSVPAAEE490 pKa = 4.31TEE492 pKa = 4.42PVSSADD498 pKa = 3.97KK499 pKa = 10.8ISTTTDD505 pKa = 2.81TTFIEE510 pKa = 4.73VPPSLSVPAAEE521 pKa = 4.65TEE523 pKa = 4.32PVPPTDD529 pKa = 3.47SSSATSSEE537 pKa = 3.83EE538 pKa = 3.83TTTVIEE544 pKa = 4.45VPPSPSVPAAEE555 pKa = 4.46TEE557 pKa = 4.27PVPPADD563 pKa = 3.65TSSAATTADD572 pKa = 3.67KK573 pKa = 10.65PPQEE577 pKa = 4.4SSSVTDD583 pKa = 3.2SSAPAEE589 pKa = 4.4PNSSEE594 pKa = 4.27STSDD598 pKa = 2.79TTAAVAEE605 pKa = 4.66PEE607 pKa = 4.49TTTQAPTSAAEE618 pKa = 3.77ITTAAEE624 pKa = 4.11ATTTAAEE631 pKa = 4.26IVSSEE636 pKa = 4.28EE637 pKa = 3.89PSTTTSDD644 pKa = 3.21SAIFIPEE651 pKa = 4.2GPTEE655 pKa = 4.01EE656 pKa = 4.75SSTSVEE662 pKa = 4.11TTTASDD668 pKa = 5.43DD669 pKa = 3.91IPPSPSDD676 pKa = 3.39GAGDD680 pKa = 3.4IVSTTTAAAIDD691 pKa = 3.88VSLEE695 pKa = 3.99TSEE698 pKa = 4.88SQVAPSPSTSEE709 pKa = 4.05EE710 pKa = 4.41VPTTTTTTSVEE721 pKa = 4.35SSVTTADD728 pKa = 3.2AGPRR732 pKa = 11.84ALTLPEE738 pKa = 4.68AYY740 pKa = 10.41SLVTRR745 pKa = 11.84EE746 pKa = 4.24LSSLPSCLIGCLNPDD761 pKa = 3.35HH762 pKa = 7.05SSSVTDD768 pKa = 3.49DD769 pKa = 3.56TANDD773 pKa = 3.68LCIDD777 pKa = 4.03AFGNDD782 pKa = 3.37PFALVMCIVSDD793 pKa = 3.92CTGGDD798 pKa = 3.28FDD800 pKa = 5.01VVINALTDD808 pKa = 3.48PTITEE813 pKa = 4.37GLSNACNVIYY823 pKa = 10.58ASIPEE828 pKa = 4.41TISTSFEE835 pKa = 3.92SSSAAEE841 pKa = 4.06PTTTTTAASVAAAPVSPIFSSSTWSMFAAAPVKK874 pKa = 10.69NGVNGTCGGYY884 pKa = 10.39AADD887 pKa = 5.52AATCLPGLKK896 pKa = 9.88CVSKK900 pKa = 10.81SVNEE904 pKa = 4.05VGTCQKK910 pKa = 10.56PVVNDD915 pKa = 3.24VGQTCGGSITNNPASCAGSLACMPNFIPGLPGTCQMPVEE954 pKa = 4.5PSPLTSLSSSSIVVRR969 pKa = 11.84PTTTKK974 pKa = 9.45KK975 pKa = 8.64HH976 pKa = 5.32KK977 pKa = 9.68KK978 pKa = 7.92YY979 pKa = 10.69RR980 pKa = 11.84MVIKK984 pKa = 9.47TVEE987 pKa = 4.3CTTTTVTTTTSTQYY1001 pKa = 11.12AIQSSSPP1008 pKa = 3.22

Molecular weight: 100.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A507D400|A0A507D400_9FUNG Pirin domain-containing protein OS=Chytriomyces confervae OX=246404 GN=CcCBS67573_g10330 PE=3 SV=1
MM1 pKa = 7.54SSARR5 pKa = 11.84LTGPIPGSFGNMINLVEE22 pKa = 5.81LRR24 pKa = 11.84LQMNKK29 pKa = 10.33LLGTVLVIACNSRR42 pKa = 11.84PSNAKK47 pKa = 9.24RR48 pKa = 11.84INFRR52 pKa = 11.84RR53 pKa = 11.84PTTCNASAEE62 pKa = 4.23RR63 pKa = 11.84IEE65 pKa = 4.5MGDD68 pKa = 3.49NQLTPIVDD76 pKa = 3.24IDD78 pKa = 3.57SDD80 pKa = 3.76RR81 pKa = 11.84TSGYY85 pKa = 9.48IYY87 pKa = 9.24PFPSVSLDD95 pKa = 3.56LQSPNAGSNQLQEE108 pKa = 5.34DD109 pKa = 4.4SFADD113 pKa = 4.37TIDD116 pKa = 3.56SDD118 pKa = 4.75SMFTSRR124 pKa = 11.84LGLSRR129 pKa = 11.84TQLSRR134 pKa = 11.84KK135 pKa = 9.46LPNCSKK141 pKa = 10.76KK142 pKa = 10.65SATHH146 pKa = 5.77SPQRR150 pKa = 11.84QQSRR154 pKa = 11.84WSVSHH159 pKa = 6.63RR160 pKa = 11.84NWRR163 pKa = 11.84LRR165 pKa = 11.84KK166 pKa = 8.82IGKK169 pKa = 9.14RR170 pKa = 11.84RR171 pKa = 3.3

Molecular weight: 19.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10661

0

10661

5997939

10

6810

562.6

61.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.948 ± 0.02

1.337 ± 0.009

5.37 ± 0.016

5.826 ± 0.026

4.059 ± 0.014

6.246 ± 0.022

2.304 ± 0.011

5.087 ± 0.016

5.394 ± 0.022

9.224 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.415 ± 0.008

4.235 ± 0.012

5.138 ± 0.023

3.998 ± 0.018

5.055 ± 0.017

8.957 ± 0.032

5.937 ± 0.025

6.8 ± 0.024

1.111 ± 0.007

2.558 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski