Verticillium dahliae partitivirus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M3LA90|A0A0M3LA90_9VIRU RNA-dependent RNA polymerase OS=Verticillium dahliae partitivirus 1 OX=1310424 GN=RdRp PE=4 SV=1
MM1 pKa = 8.04ADD3 pKa = 3.53TQSQLPSTVAPSDD16 pKa = 3.72SASTAGRR23 pKa = 11.84KK24 pKa = 8.95SKK26 pKa = 10.2PGKK29 pKa = 10.18AEE31 pKa = 3.65RR32 pKa = 11.84QARR35 pKa = 11.84RR36 pKa = 11.84SAVGSQPGQAASASKK51 pKa = 10.84ASAFSSGISAPKK63 pKa = 8.53PQPGKK68 pKa = 10.6YY69 pKa = 9.01PVVFQTGAGEE79 pKa = 4.02PARR82 pKa = 11.84DD83 pKa = 3.25QTFALDD89 pKa = 3.5EE90 pKa = 4.38RR91 pKa = 11.84VLEE94 pKa = 4.24RR95 pKa = 11.84SLRR98 pKa = 11.84TFPDD102 pKa = 2.92RR103 pKa = 11.84FTFNAKK109 pKa = 8.79YY110 pKa = 10.89AEE112 pKa = 4.41FKK114 pKa = 10.66SHH116 pKa = 7.52AEE118 pKa = 3.79IDD120 pKa = 3.56DD121 pKa = 4.0HH122 pKa = 7.05EE123 pKa = 4.45FTKK126 pKa = 10.99DD127 pKa = 3.37LVVAALLRR135 pKa = 11.84LAQQVVHH142 pKa = 5.67SHH144 pKa = 5.41VNMGLPQGDD153 pKa = 4.28FAPVASSDD161 pKa = 3.46VRR163 pKa = 11.84VPASLAAFISQFGEE177 pKa = 4.1FSVPTLGTRR186 pKa = 11.84FLFSDD191 pKa = 3.82YY192 pKa = 10.61EE193 pKa = 4.14NTVRR197 pKa = 11.84SIVWMAEE204 pKa = 3.74GVKK207 pKa = 10.56RR208 pKa = 11.84NGIGGAPLKK217 pKa = 10.64RR218 pKa = 11.84SWLPVRR224 pKa = 11.84PSDD227 pKa = 3.33GHH229 pKa = 5.6TKK231 pKa = 9.31TVIASRR237 pKa = 11.84LCEE240 pKa = 3.97LLAQAEE246 pKa = 4.37LAVDD250 pKa = 4.04PDD252 pKa = 3.8ALEE255 pKa = 4.59GGVLSGEE262 pKa = 4.45IPDD265 pKa = 3.29AWEE268 pKa = 4.08SIKK271 pKa = 10.71PVLGDD276 pKa = 3.09NDD278 pKa = 3.4EE279 pKa = 4.21RR280 pKa = 11.84RR281 pKa = 11.84DD282 pKa = 3.69RR283 pKa = 11.84FDD285 pKa = 5.13FLFKK289 pKa = 10.45SYY291 pKa = 10.57RR292 pKa = 11.84DD293 pKa = 3.35APAFVTAFTTASASGVLAEE312 pKa = 6.06LDD314 pKa = 4.06LSWDD318 pKa = 3.78RR319 pKa = 11.84PSAGHH324 pKa = 6.45VDD326 pKa = 2.89WTFNPKK332 pKa = 9.7EE333 pKa = 4.09VFTRR337 pKa = 11.84LSDD340 pKa = 2.85AWARR344 pKa = 11.84RR345 pKa = 11.84STTYY349 pKa = 11.61ALFFEE354 pKa = 5.28LSSSQMTRR362 pKa = 11.84NVSAGSQSQMARR374 pKa = 11.84VNTRR378 pKa = 11.84DD379 pKa = 2.96GVTVVKK385 pKa = 9.06THH387 pKa = 6.95LGLSAPEE394 pKa = 4.12FSLVACFPASVIFTGGLTRR413 pKa = 11.84RR414 pKa = 11.84VVVTTPLSVEE424 pKa = 3.73QRR426 pKa = 11.84ATEE429 pKa = 4.28FVQMDD434 pKa = 3.21WRR436 pKa = 5.26

Molecular weight: 47.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M3LA90|A0A0M3LA90_9VIRU RNA-dependent RNA polymerase OS=Verticillium dahliae partitivirus 1 OX=1310424 GN=RdRp PE=4 SV=1
MM1 pKa = 7.93EE2 pKa = 6.77DD3 pKa = 3.42FTQDD7 pKa = 3.31PTTHH11 pKa = 6.67NIVAEE16 pKa = 4.58GSHH19 pKa = 7.06LIDD22 pKa = 4.56ALHH25 pKa = 6.35LRR27 pKa = 11.84PPKK30 pKa = 10.28SRR32 pKa = 11.84SATSEE37 pKa = 4.03DD38 pKa = 3.8VVSSNFRR45 pKa = 11.84SPNLAEE51 pKa = 3.65IAKK54 pKa = 9.21YY55 pKa = 10.3GGYY58 pKa = 7.94STYY61 pKa = 11.11SSNSNTDD68 pKa = 2.97PYY70 pKa = 11.29VRR72 pKa = 11.84EE73 pKa = 3.98TLKK76 pKa = 10.98LFSRR80 pKa = 11.84DD81 pKa = 3.06TYY83 pKa = 10.88EE84 pKa = 5.05DD85 pKa = 2.74IRR87 pKa = 11.84GFTRR91 pKa = 11.84RR92 pKa = 11.84PQGTPGMYY100 pKa = 8.42TALKK104 pKa = 9.81KK105 pKa = 10.83FSGEE109 pKa = 3.94RR110 pKa = 11.84NTFGDD115 pKa = 4.73LSPSQQSSMRR125 pKa = 11.84RR126 pKa = 11.84AIGKK130 pKa = 9.39AKK132 pKa = 10.31KK133 pKa = 10.09AFKK136 pKa = 10.39LPYY139 pKa = 9.55KK140 pKa = 10.34RR141 pKa = 11.84EE142 pKa = 3.91PLDD145 pKa = 3.15WHH147 pKa = 6.48EE148 pKa = 4.21VGQFLRR154 pKa = 11.84RR155 pKa = 11.84DD156 pKa = 3.56TAAGATFMGQKK167 pKa = 10.11KK168 pKa = 9.68GDD170 pKa = 3.59VMEE173 pKa = 5.62AIYY176 pKa = 10.8HH177 pKa = 5.12EE178 pKa = 4.58ARR180 pKa = 11.84WLGHH184 pKa = 6.1RR185 pKa = 11.84MKK187 pKa = 10.64QDD189 pKa = 2.56GRR191 pKa = 11.84AGFDD195 pKa = 3.4PTRR198 pKa = 11.84MRR200 pKa = 11.84FPPCLAGQRR209 pKa = 11.84GGMSEE214 pKa = 3.87IDD216 pKa = 3.64DD217 pKa = 4.28PKK219 pKa = 11.01TRR221 pKa = 11.84LVWIYY226 pKa = 8.84PAEE229 pKa = 4.02MLVVEE234 pKa = 5.03GFYY237 pKa = 11.12APLMYY242 pKa = 9.66RR243 pKa = 11.84DD244 pKa = 4.75FMSDD248 pKa = 3.17PNSPMLNGKK257 pKa = 8.31SAQRR261 pKa = 11.84LYY263 pKa = 10.74TEE265 pKa = 4.78WCCKK269 pKa = 10.29LRR271 pKa = 11.84DD272 pKa = 3.54GEE274 pKa = 4.38TLYY277 pKa = 11.52GIDD280 pKa = 4.38FSSFDD285 pKa = 3.59TKK287 pKa = 10.85VPAWLIRR294 pKa = 11.84VAFDD298 pKa = 4.45ILRR301 pKa = 11.84QNINFEE307 pKa = 4.4TFGGKK312 pKa = 9.0PVDD315 pKa = 3.87KK316 pKa = 10.81QDD318 pKa = 3.18AQKK321 pKa = 9.9WRR323 pKa = 11.84NVWDD327 pKa = 3.45AMVWYY332 pKa = 8.66FINTPILMPDD342 pKa = 2.44GRR344 pKa = 11.84MFRR347 pKa = 11.84KK348 pKa = 9.65FRR350 pKa = 11.84GVPSGSWWTQMIDD363 pKa = 3.35SVVNHH368 pKa = 6.47ILIDD372 pKa = 3.82YY373 pKa = 9.97LADD376 pKa = 3.6CQRR379 pKa = 11.84VEE381 pKa = 3.79IRR383 pKa = 11.84NLRR386 pKa = 11.84VLGDD390 pKa = 3.83DD391 pKa = 4.09SAFCSGDD398 pKa = 3.46QFDD401 pKa = 5.38LEE403 pKa = 4.38LAKK406 pKa = 10.61GDD408 pKa = 4.12CEE410 pKa = 4.14PTGMVIKK417 pKa = 10.24PEE419 pKa = 3.85KK420 pKa = 10.31CEE422 pKa = 3.87RR423 pKa = 11.84TKK425 pKa = 11.38DD426 pKa = 3.35PGEE429 pKa = 4.12FKK431 pKa = 11.16LLGTTYY437 pKa = 10.59RR438 pKa = 11.84GGHH441 pKa = 5.07VFRR444 pKa = 11.84DD445 pKa = 3.58TEE447 pKa = 4.14EE448 pKa = 3.94WFKK451 pKa = 11.12LALYY455 pKa = 9.52PEE457 pKa = 4.73SSVLTLDD464 pKa = 3.19ISFTRR469 pKa = 11.84LIGLWLGGAMWDD481 pKa = 4.3KK482 pKa = 10.88RR483 pKa = 11.84FCEE486 pKa = 4.09YY487 pKa = 10.34MDD489 pKa = 4.67FFQSSYY495 pKa = 10.42PCPEE499 pKa = 4.29EE500 pKa = 4.24GWFSKK505 pKa = 10.13DD506 pKa = 3.02QKK508 pKa = 10.51RR509 pKa = 11.84WLEE512 pKa = 3.89IIYY515 pKa = 10.23SGKK518 pKa = 10.27APRR521 pKa = 11.84GWTSKK526 pKa = 10.79KK527 pKa = 9.83SLFWRR532 pKa = 11.84SIFYY536 pKa = 10.51AYY538 pKa = 10.44GG539 pKa = 3.3

Molecular weight: 62.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

975

436

539

487.5

54.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.308 ± 2.015

1.128 ± 0.398

6.667 ± 0.418

5.333 ± 0.171

6.154 ± 0.023

7.282 ± 0.511

1.538 ± 0.04

3.385 ± 0.785

5.026 ± 0.806

7.487 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.564 ± 0.706

2.256 ± 0.251

5.744 ± 0.131

3.59 ± 0.32

7.487 ± 0.088

8.615 ± 1.15

6.051 ± 0.357

6.154 ± 1.523

2.462 ± 0.509

2.769 ± 0.965
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski