Amino acid dipepetide frequency for Verticillium dahliae partitivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.107AlaAla: 4.107 ± 1.823
1.027AlaCys: 1.027 ± 0.832
2.053AlaAsp: 2.053 ± 0.159
9.24AlaGlu: 9.24 ± 2.974
7.187AlaPhe: 7.187 ± 1.31
7.187AlaGly: 7.187 ± 1.31
0.0AlaHis: 0.0 ± 0.0
2.053AlaIle: 2.053 ± 1.346
4.107AlaLys: 4.107 ± 1.187
7.187AlaLeu: 7.187 ± 1.31
2.053AlaMet: 2.053 ± 1.346
0.0AlaAsn: 0.0 ± 0.0
8.214AlaPro: 8.214 ± 3.647
4.107AlaGln: 4.107 ± 0.318
5.133AlaArg: 5.133 ± 2.655
10.267AlaSer: 10.267 ± 8.321
3.08AlaThr: 3.08 ± 0.514
2.053AlaVal: 2.053 ± 1.664
3.08AlaTrp: 3.08 ± 0.991
1.027AlaTyr: 1.027 ± 0.673
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
1.027CysCys: 1.027 ± 0.673
0.0CysAsp: 0.0 ± 0.0
4.107CysGlu: 4.107 ± 1.187
1.027CysPhe: 1.027 ± 0.832
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
1.027CysLys: 1.027 ± 0.673
1.027CysLeu: 1.027 ± 0.673
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.027CysPro: 1.027 ± 0.673
1.027CysGln: 1.027 ± 0.673
0.0CysArg: 0.0 ± 0.0
1.027CysSer: 1.027 ± 0.673
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
7.187AspAla: 7.187 ± 1.31
2.053AspCys: 2.053 ± 1.346
3.08AspAsp: 3.08 ± 0.514
2.053AspGlu: 2.053 ± 1.664
6.16AspPhe: 6.16 ± 1.028
5.133AspGly: 5.133 ± 0.355
1.027AspHis: 1.027 ± 0.832
3.08AspIle: 3.08 ± 2.019
2.053AspLys: 2.053 ± 1.346
4.107AspLeu: 4.107 ± 0.318
0.0AspMet: 0.0 ± 0.0
1.027AspAsn: 1.027 ± 0.832
7.187AspPro: 7.187 ± 3.205
3.08AspGln: 3.08 ± 0.514
3.08AspArg: 3.08 ± 2.496
3.08AspSer: 3.08 ± 0.514
5.133AspThr: 5.133 ± 1.86
3.08AspVal: 3.08 ± 0.514
3.08AspTrp: 3.08 ± 0.991
2.053AspTyr: 2.053 ± 0.159
0.0AspXaa: 0.0 ± 0.0
Glu
2.053GluAla: 2.053 ± 1.346
0.0GluCys: 0.0 ± 0.0
3.08GluAsp: 3.08 ± 2.019
2.053GluGlu: 2.053 ± 1.346
6.16GluPhe: 6.16 ± 3.487
5.133GluGly: 5.133 ± 0.355
0.0GluHis: 0.0 ± 0.0
6.16GluIle: 6.16 ± 1.028
1.027GluLys: 1.027 ± 0.673
5.133GluLeu: 5.133 ± 2.655
1.027GluMet: 1.027 ± 0.673
1.027GluAsn: 1.027 ± 0.832
3.08GluPro: 3.08 ± 0.514
1.027GluGln: 1.027 ± 0.832
6.16GluArg: 6.16 ± 1.982
2.053GluSer: 2.053 ± 0.159
3.08GluThr: 3.08 ± 2.019
2.053GluVal: 2.053 ± 0.159
2.053GluTrp: 2.053 ± 1.346
1.027GluTyr: 1.027 ± 0.673
0.0GluXaa: 0.0 ± 0.0
Phe
2.053PheAla: 2.053 ± 1.664
2.053PheCys: 2.053 ± 1.346
5.133PheAsp: 5.133 ± 1.86
2.053PheGlu: 2.053 ± 0.159
2.053PhePhe: 2.053 ± 0.159
3.08PheGly: 3.08 ± 0.514
0.0PheHis: 0.0 ± 0.0
2.053PheIle: 2.053 ± 0.159
5.133PheLys: 5.133 ± 0.355
3.08PheLeu: 3.08 ± 0.991
2.053PheMet: 2.053 ± 1.346
2.053PheAsn: 2.053 ± 1.664
3.08PhePro: 3.08 ± 0.991
2.053PheGln: 2.053 ± 0.159
4.107PheArg: 4.107 ± 2.692
8.214PheSer: 8.214 ± 0.637
8.214PheThr: 8.214 ± 2.142
2.053PheVal: 2.053 ± 1.664
1.027PheTrp: 1.027 ± 0.673
2.053PheTyr: 2.053 ± 1.346
0.0PheXaa: 0.0 ± 0.0
Gly
4.107GlyAla: 4.107 ± 0.318
0.0GlyCys: 0.0 ± 0.0
7.187GlyAsp: 7.187 ± 1.7
6.16GlyGlu: 6.16 ± 0.477
3.08GlyPhe: 3.08 ± 2.019
8.214GlyGly: 8.214 ± 0.868
4.107GlyHis: 4.107 ± 0.318
3.08GlyIle: 3.08 ± 0.991
6.16GlyLys: 6.16 ± 1.028
4.107GlyLeu: 4.107 ± 1.823
3.08GlyMet: 3.08 ± 2.379
0.0GlyAsn: 0.0 ± 0.0
0.0GlyPro: 0.0 ± 0.0
4.107GlyGln: 4.107 ± 1.187
3.08GlyArg: 3.08 ± 0.514
4.107GlySer: 4.107 ± 0.318
3.08GlyThr: 3.08 ± 0.514
5.133GlyVal: 5.133 ± 2.655
2.053GlyTrp: 2.053 ± 1.346
1.027GlyTyr: 1.027 ± 0.673
0.0GlyXaa: 0.0 ± 0.0
His
1.027HisAla: 1.027 ± 0.832
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
3.08HisGlu: 3.08 ± 0.514
0.0HisPhe: 0.0 ± 0.0
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
1.027HisIle: 1.027 ± 0.673
0.0HisLys: 0.0 ± 0.0
3.08HisLeu: 3.08 ± 0.514
0.0HisMet: 0.0 ± 0.0
1.027HisAsn: 1.027 ± 0.673
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
1.027HisArg: 1.027 ± 0.673
1.027HisSer: 1.027 ± 0.832
1.027HisThr: 1.027 ± 0.832
3.08HisVal: 3.08 ± 0.991
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.053IleAla: 2.053 ± 0.159
0.0IleCys: 0.0 ± 0.0
6.16IleAsp: 6.16 ± 2.533
0.0IleGlu: 0.0 ± 0.0
2.053IlePhe: 2.053 ± 0.159
3.08IleGly: 3.08 ± 0.514
0.0IleHis: 0.0 ± 0.0
1.027IleIle: 1.027 ± 0.673
2.053IleLys: 2.053 ± 0.159
3.08IleLeu: 3.08 ± 2.019
0.0IleMet: 0.0 ± 0.0
2.053IleAsn: 2.053 ± 1.346
1.027IlePro: 1.027 ± 0.832
0.0IleGln: 0.0 ± 0.0
3.08IleArg: 3.08 ± 2.019
3.08IleSer: 3.08 ± 0.991
0.0IleThr: 0.0 ± 0.0
2.053IleVal: 2.053 ± 0.159
0.0IleTrp: 0.0 ± 0.0
3.08IleTyr: 3.08 ± 2.019
0.0IleXaa: 0.0 ± 0.0
Lys
5.133LysAla: 5.133 ± 0.355
1.027LysCys: 1.027 ± 0.673
3.08LysAsp: 3.08 ± 0.514
1.027LysGlu: 1.027 ± 0.832
2.053LysPhe: 2.053 ± 1.346
2.053LysGly: 2.053 ± 1.346
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
4.107LysLys: 4.107 ± 2.692
5.133LysLeu: 5.133 ± 3.365
0.0LysMet: 0.0 ± 0.0
0.0LysAsn: 0.0 ± 0.0
5.133LysPro: 5.133 ± 1.15
2.053LysGln: 2.053 ± 1.346
5.133LysArg: 5.133 ± 0.355
6.16LysSer: 6.16 ± 0.477
3.08LysThr: 3.08 ± 0.991
1.027LysVal: 1.027 ± 0.673
1.027LysTrp: 1.027 ± 0.673
3.08LysTyr: 3.08 ± 0.991
0.0LysXaa: 0.0 ± 0.0
Leu
10.267LeuAla: 10.267 ± 0.796
1.027LeuCys: 1.027 ± 0.832
4.107LeuAsp: 4.107 ± 0.318
4.107LeuGlu: 4.107 ± 0.318
5.133LeuPhe: 5.133 ± 1.15
7.187LeuGly: 7.187 ± 0.195
1.027LeuHis: 1.027 ± 0.673
4.107LeuIle: 4.107 ± 2.692
3.08LeuLys: 3.08 ± 0.514
3.08LeuLeu: 3.08 ± 0.991
2.053LeuMet: 2.053 ± 1.346
1.027LeuAsn: 1.027 ± 0.673
4.107LeuPro: 4.107 ± 1.823
0.0LeuGln: 0.0 ± 0.0
7.187LeuArg: 7.187 ± 1.7
7.187LeuSer: 7.187 ± 4.32
2.053LeuThr: 2.053 ± 0.159
4.107LeuVal: 4.107 ± 0.318
1.027LeuTrp: 1.027 ± 0.673
3.08LeuTyr: 3.08 ± 2.019
0.0LeuXaa: 0.0 ± 0.0
Met
3.08MetAla: 3.08 ± 2.496
0.0MetCys: 0.0 ± 0.0
2.053MetAsp: 2.053 ± 0.159
2.053MetGlu: 2.053 ± 1.346
1.027MetPhe: 1.027 ± 0.673
2.053MetGly: 2.053 ± 0.159
0.0MetHis: 0.0 ± 0.0
1.027MetIle: 1.027 ± 0.673
1.027MetLys: 1.027 ± 0.673
2.053MetLeu: 2.053 ± 1.346
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.027MetPro: 1.027 ± 0.673
0.0MetGln: 0.0 ± 0.0
2.053MetArg: 2.053 ± 1.346
2.053MetSer: 2.053 ± 1.346
1.027MetThr: 1.027 ± 0.832
2.053MetVal: 2.053 ± 1.346
1.027MetTrp: 1.027 ± 0.673
2.053MetTyr: 2.053 ± 1.346
0.0MetXaa: 0.0 ± 0.0
Asn
1.027AsnAla: 1.027 ± 0.832
0.0AsnCys: 0.0 ± 0.0
1.027AsnAsp: 1.027 ± 0.832
0.0AsnGlu: 0.0 ± 0.0
2.053AsnPhe: 2.053 ± 1.346
2.053AsnGly: 2.053 ± 0.159
1.027AsnHis: 1.027 ± 0.673
2.053AsnIle: 2.053 ± 1.346
0.0AsnLys: 0.0 ± 0.0
2.053AsnLeu: 2.053 ± 1.346
1.027AsnMet: 1.027 ± 0.832
0.0AsnAsn: 0.0 ± 0.0
1.027AsnPro: 1.027 ± 0.832
0.0AsnGln: 0.0 ± 0.0
0.0AsnArg: 0.0 ± 0.0
2.053AsnSer: 2.053 ± 1.346
5.133AsnThr: 5.133 ± 0.355
2.053AsnVal: 2.053 ± 0.159
0.0AsnTrp: 0.0 ± 0.0
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
6.16ProAla: 6.16 ± 1.982
2.053ProCys: 2.053 ± 1.346
4.107ProAsp: 4.107 ± 1.823
4.107ProGlu: 4.107 ± 1.187
0.0ProPhe: 0.0 ± 0.0
5.133ProGly: 5.133 ± 1.15
0.0ProHis: 0.0 ± 0.0
1.027ProIle: 1.027 ± 0.673
4.107ProLys: 4.107 ± 0.318
4.107ProLeu: 4.107 ± 0.318
1.027ProMet: 1.027 ± 0.673
2.053ProAsn: 2.053 ± 1.346
2.053ProPro: 2.053 ± 1.346
3.08ProGln: 3.08 ± 0.991
1.027ProArg: 1.027 ± 0.673
6.16ProSer: 6.16 ± 1.982
4.107ProThr: 4.107 ± 1.187
5.133ProVal: 5.133 ± 2.655
0.0ProTrp: 0.0 ± 0.0
2.053ProTyr: 2.053 ± 1.346
0.0ProXaa: 0.0 ± 0.0
Gln
3.08GlnAla: 3.08 ± 2.496
0.0GlnCys: 0.0 ± 0.0
3.08GlnAsp: 3.08 ± 2.019
0.0GlnGlu: 0.0 ± 0.0
3.08GlnPhe: 3.08 ± 0.514
2.053GlnGly: 2.053 ± 0.159
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
3.08GlnLys: 3.08 ± 2.019
1.027GlnLeu: 1.027 ± 0.832
4.107GlnMet: 4.107 ± 1.823
1.027GlnAsn: 1.027 ± 0.673
2.053GlnPro: 2.053 ± 1.664
2.053GlnGln: 2.053 ± 0.159
4.107GlnArg: 4.107 ± 1.187
4.107GlnSer: 4.107 ± 0.318
2.053GlnThr: 2.053 ± 1.664
1.027GlnVal: 1.027 ± 0.832
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.08ArgAla: 3.08 ± 0.514
0.0ArgCys: 0.0 ± 0.0
9.24ArgAsp: 9.24 ± 0.036
2.053ArgGlu: 2.053 ± 1.346
5.133ArgPhe: 5.133 ± 1.15
5.133ArgGly: 5.133 ± 3.365
0.0ArgHis: 0.0 ± 0.0
0.0ArgIle: 0.0 ± 0.0
2.053ArgLys: 2.053 ± 0.159
6.16ArgLeu: 6.16 ± 0.477
4.107ArgMet: 4.107 ± 1.644
5.133ArgAsn: 5.133 ± 0.355
4.107ArgPro: 4.107 ± 0.318
2.053ArgGln: 2.053 ± 0.159
7.187ArgArg: 7.187 ± 1.31
8.214ArgSer: 8.214 ± 2.142
2.053ArgThr: 2.053 ± 0.159
7.187ArgVal: 7.187 ± 1.31
2.053ArgTrp: 2.053 ± 1.346
0.0ArgTyr: 0.0 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
12.32SerAla: 12.32 ± 5.47
0.0SerCys: 0.0 ± 0.0
6.16SerAsp: 6.16 ± 3.487
2.053SerGlu: 2.053 ± 1.346
2.053SerPhe: 2.053 ± 1.346
7.187SerGly: 7.187 ± 0.195
3.08SerHis: 3.08 ± 0.991
3.08SerIle: 3.08 ± 0.991
4.107SerLys: 4.107 ± 0.318
4.107SerLeu: 4.107 ± 1.823
1.027SerMet: 1.027 ± 0.673
3.08SerAsn: 3.08 ± 2.019
3.08SerPro: 3.08 ± 2.019
7.187SerGln: 7.187 ± 4.32
3.08SerArg: 3.08 ± 0.514
10.267SerSer: 10.267 ± 0.709
4.107SerThr: 4.107 ± 1.823
5.133SerVal: 5.133 ± 1.15
3.08SerTrp: 3.08 ± 0.991
2.053SerTyr: 2.053 ± 0.159
0.0SerXaa: 0.0 ± 0.0
Thr
5.133ThrAla: 5.133 ± 1.15
0.0ThrCys: 0.0 ± 0.0
1.027ThrAsp: 1.027 ± 0.673
3.08ThrGlu: 3.08 ± 0.514
7.187ThrPhe: 7.187 ± 1.31
3.08ThrGly: 3.08 ± 0.991
2.053ThrHis: 2.053 ± 0.159
0.0ThrIle: 0.0 ± 0.0
4.107ThrLys: 4.107 ± 0.318
4.107ThrLeu: 4.107 ± 1.187
0.0ThrMet: 0.0 ± 0.0
0.0ThrAsn: 0.0 ± 0.0
3.08ThrPro: 3.08 ± 0.514
3.08ThrGln: 3.08 ± 0.514
9.24ThrArg: 9.24 ± 1.469
2.053ThrSer: 2.053 ± 1.346
5.133ThrThr: 5.133 ± 1.15
4.107ThrVal: 4.107 ± 3.328
0.0ThrTrp: 0.0 ± 0.0
4.107ThrTyr: 4.107 ± 1.187
0.0ThrXaa: 0.0 ± 0.0
Val
6.16ValAla: 6.16 ± 1.982
0.0ValCys: 0.0 ± 0.0
3.08ValAsp: 3.08 ± 0.991
3.08ValGlu: 3.08 ± 0.514
3.08ValPhe: 3.08 ± 0.991
2.053ValGly: 2.053 ± 0.159
1.027ValHis: 1.027 ± 0.832
3.08ValIle: 3.08 ± 0.991
2.053ValLys: 2.053 ± 1.664
6.16ValLeu: 6.16 ± 1.982
1.027ValMet: 1.027 ± 0.673
3.08ValAsn: 3.08 ± 0.991
4.107ValPro: 4.107 ± 0.318
1.027ValGln: 1.027 ± 0.832
4.107ValArg: 4.107 ± 1.823
2.053ValSer: 2.053 ± 0.159
3.08ValThr: 3.08 ± 2.496
9.24ValVal: 9.24 ± 2.974
4.107ValTrp: 4.107 ± 1.187
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.027TrpAla: 1.027 ± 0.832
1.027TrpCys: 1.027 ± 0.673
3.08TrpAsp: 3.08 ± 0.514
1.027TrpGlu: 1.027 ± 0.832
2.053TrpPhe: 2.053 ± 1.346
0.0TrpGly: 0.0 ± 0.0
1.027TrpHis: 1.027 ± 0.673
1.027TrpIle: 1.027 ± 0.673
0.0TrpLys: 0.0 ± 0.0
5.133TrpLeu: 5.133 ± 1.86
1.027TrpMet: 1.027 ± 0.832
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
3.08TrpArg: 3.08 ± 0.514
0.0TrpSer: 0.0 ± 0.0
3.08TrpThr: 3.08 ± 0.514
0.0TrpVal: 0.0 ± 0.0
1.027TrpTrp: 1.027 ± 0.673
1.027TrpTyr: 1.027 ± 0.673
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.107TyrAla: 4.107 ± 0.318
0.0TyrCys: 0.0 ± 0.0
0.0TyrAsp: 0.0 ± 0.0
2.053TyrGlu: 2.053 ± 0.159
1.027TyrPhe: 1.027 ± 0.673
3.08TyrGly: 3.08 ± 2.019
1.027TyrHis: 1.027 ± 0.673
0.0TyrIle: 0.0 ± 0.0
1.027TyrLys: 1.027 ± 0.673
1.027TyrLeu: 1.027 ± 0.673
1.027TyrMet: 1.027 ± 0.673
0.0TyrAsn: 0.0 ± 0.0
4.107TyrPro: 4.107 ± 1.187
0.0TyrGln: 0.0 ± 0.0
3.08TyrArg: 3.08 ± 0.514
3.08TyrSer: 3.08 ± 2.019
2.053TyrThr: 2.053 ± 1.346
1.027TyrVal: 1.027 ± 0.673
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (975 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski