Trichomalopsis sarcophagae

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Pteromalidae; Pteromalinae;

Average proteome isoelectric point is 7.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16064 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A232FGZ8|A0A232FGZ8_9HYME Coiled-coil domain-containing protein 86 OS=Trichomalopsis sarcophagae OX=543379 GN=TSAR_010731 PE=4 SV=1
MM1 pKa = 7.39LRR3 pKa = 11.84DD4 pKa = 3.84ANDD7 pKa = 5.09DD8 pKa = 3.22IHH10 pKa = 8.6ICICDD15 pKa = 3.86VIFLLHH21 pKa = 5.34VQEE24 pKa = 5.99DD25 pKa = 3.64ITIFQIDD32 pKa = 3.77STYY35 pKa = 8.76EE36 pKa = 3.79TVPEE40 pKa = 4.14VEE42 pKa = 5.44GAMQLCTLIVIYY54 pKa = 10.23HH55 pKa = 5.15GHH57 pKa = 6.09EE58 pKa = 5.5DD59 pKa = 3.05ITIFQIDD66 pKa = 3.77STYY69 pKa = 8.76EE70 pKa = 3.79TVPEE74 pKa = 4.14VEE76 pKa = 5.44GAMQLCTLIVIYY88 pKa = 10.16HH89 pKa = 6.15GHH91 pKa = 7.7PDD93 pKa = 3.61PDD95 pKa = 4.28LDD97 pKa = 4.11PEE99 pKa = 4.44LVIEE103 pKa = 4.7PEE105 pKa = 4.11FEE107 pKa = 4.46LEE109 pKa = 4.27PEE111 pKa = 4.19RR112 pKa = 11.84QLEE115 pKa = 4.3PEE117 pKa = 4.63LEE119 pKa = 4.2LEE121 pKa = 4.45PEE123 pKa = 4.18RR124 pKa = 11.84EE125 pKa = 3.86LDD127 pKa = 4.5LTLEE131 pKa = 4.87DD132 pKa = 4.78CDD134 pKa = 5.03SLIPLDD140 pKa = 5.26AITDD144 pKa = 3.71HH145 pKa = 7.0FLFLALPLLTEE156 pKa = 5.12PDD158 pKa = 3.92PDD160 pKa = 4.51LDD162 pKa = 4.19PEE164 pKa = 4.73PEE166 pKa = 4.37LEE168 pKa = 4.89LEE170 pKa = 4.59PEE172 pKa = 4.14RR173 pKa = 11.84QLEE176 pKa = 4.24PEE178 pKa = 4.1RR179 pKa = 11.84QLEE182 pKa = 4.3PEE184 pKa = 4.59LEE186 pKa = 4.21LEE188 pKa = 4.61PEE190 pKa = 4.39LEE192 pKa = 4.52LDD194 pKa = 4.83LTLEE198 pKa = 4.73DD199 pKa = 4.64CGSLIPLDD207 pKa = 5.06AITDD211 pKa = 3.67RR212 pKa = 11.84RR213 pKa = 11.84GGG215 pKa = 3.46

Molecular weight: 24.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A232F0I2|A0A232F0I2_9HYME SMC_N domain-containing protein OS=Trichomalopsis sarcophagae OX=543379 GN=TSAR_000364 PE=3 SV=1
MM1 pKa = 7.55LSLHH5 pKa = 6.55GSRR8 pKa = 11.84SGQHH12 pKa = 6.22APNKK16 pKa = 10.04LRR18 pKa = 11.84LSKK21 pKa = 10.3PNRR24 pKa = 11.84VRR26 pKa = 11.84AGKK29 pKa = 10.04SRR31 pKa = 11.84LFLAPLSLQLPGVSTRR47 pKa = 11.84GRR49 pKa = 11.84GKK51 pKa = 10.64VILIVSTQVATHH63 pKa = 5.13TTRR66 pKa = 11.84PTRR69 pKa = 11.84HH70 pKa = 5.62FAA72 pKa = 3.72

Molecular weight: 7.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16054

10

16064

6836071

8

7979

425.6

48.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.279 ± 0.022

1.98 ± 0.018

5.481 ± 0.015

6.772 ± 0.024

3.834 ± 0.016

5.121 ± 0.025

2.397 ± 0.009

5.897 ± 0.02

6.863 ± 0.025

9.187 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.259 ± 0.01

5.227 ± 0.019

4.794 ± 0.021

4.223 ± 0.021

5.463 ± 0.016

8.182 ± 0.026

5.66 ± 0.017

6.086 ± 0.017

1.052 ± 0.008

3.216 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski