Panicum hallii var. hallii

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum;

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 38607 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T7EAB1|A0A2T7EAB1_9POAL MFS domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G167400 PE=3 SV=1
MM1 pKa = 8.2DD2 pKa = 4.66CTHH5 pKa = 6.45HH6 pKa = 6.28QPRR9 pKa = 11.84PTMTPNPEE17 pKa = 4.24PSPAPAPPTAAPQEE31 pKa = 4.13ATGDD35 pKa = 4.01SEE37 pKa = 4.9SDD39 pKa = 2.97SDD41 pKa = 4.08TTVSALLTGDD51 pKa = 3.82HH52 pKa = 7.06PSVPGYY58 pKa = 10.65DD59 pKa = 4.22DD60 pKa = 4.61EE61 pKa = 7.83DD62 pKa = 4.23DD63 pKa = 5.11AEE65 pKa = 4.48SCSGGDD71 pKa = 3.93GGSGLCGGATSAAGGDD87 pKa = 4.02GSDD90 pKa = 4.06GDD92 pKa = 4.55DD93 pKa = 3.63DD94 pKa = 4.27VGAEE98 pKa = 3.84RR99 pKa = 11.84GEE101 pKa = 4.43AEE103 pKa = 4.58VDD105 pKa = 3.14SSMAVPWWRR114 pKa = 11.84RR115 pKa = 11.84MAVEE119 pKa = 4.14EE120 pKa = 3.93AAAAAAHH127 pKa = 7.5DD128 pKa = 4.57DD129 pKa = 4.27GGWFAPAAEE138 pKa = 4.49AGVVAGAGGHH148 pKa = 5.1SAEE151 pKa = 4.41SNILFWEE158 pKa = 4.3ACIEE162 pKa = 3.98HH163 pKa = 7.12GYY165 pKa = 10.49

Molecular weight: 16.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T7EWV5|A0A2T7EWV5_9POAL Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G383200 PE=4 SV=1
MM1 pKa = 7.65ARR3 pKa = 11.84RR4 pKa = 11.84GWARR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84GRR12 pKa = 11.84AWPPGLARR20 pKa = 11.84RR21 pKa = 11.84HH22 pKa = 4.08GWARR26 pKa = 11.84RR27 pKa = 11.84PAWAQRR33 pKa = 11.84GSAQWVMARR42 pKa = 11.84RR43 pKa = 11.84GWARR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84GRR51 pKa = 11.84AWPPGLARR59 pKa = 11.84RR60 pKa = 11.84HH61 pKa = 4.08GWARR65 pKa = 11.84RR66 pKa = 11.84PAWARR71 pKa = 11.84WPGKK75 pKa = 10.0ARR77 pKa = 11.84QPGKK81 pKa = 9.43AWRR84 pKa = 11.84RR85 pKa = 11.84GWARR89 pKa = 11.84RR90 pKa = 11.84SGSLACC96 pKa = 5.39

Molecular weight: 11.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

33011

5596

38607

15483065

29

5381

401.0

44.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.453 ± 0.019

1.923 ± 0.007

5.309 ± 0.008

6.004 ± 0.014

3.617 ± 0.008

7.358 ± 0.015

2.464 ± 0.006

4.29 ± 0.009

4.867 ± 0.011

9.491 ± 0.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.372 ± 0.005

3.458 ± 0.009

5.787 ± 0.013

3.543 ± 0.01

6.483 ± 0.013

8.38 ± 0.016

4.715 ± 0.007

6.652 ± 0.009

1.296 ± 0.005

2.537 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski