Vibrio phage VP93

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Maculvirus; Vibrio virus VP93

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 44 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3VVR0|C3VVR0_9CAUD Uncharacterized protein OS=Vibrio phage VP93 OX=641832 GN=VPP93_gp20 PE=4 SV=1
MM1 pKa = 8.21DD2 pKa = 4.86EE3 pKa = 4.22KK4 pKa = 10.78QAQNVAEE11 pKa = 4.19QEE13 pKa = 4.56VQVVAYY19 pKa = 10.1NCGEE23 pKa = 4.12GLCEE27 pKa = 3.86LFGKK31 pKa = 9.49IRR33 pKa = 11.84EE34 pKa = 4.21WAGARR39 pKa = 11.84NILKK43 pKa = 10.21GCTPLAQACKK53 pKa = 10.17LSEE56 pKa = 4.09EE57 pKa = 4.22MNEE60 pKa = 4.09VITAIVKK67 pKa = 10.46GKK69 pKa = 10.33LDD71 pKa = 3.65SLKK74 pKa = 11.03DD75 pKa = 3.93GIGDD79 pKa = 3.82SVVVLDD85 pKa = 6.11IIAAQLGADD94 pKa = 4.0FEE96 pKa = 5.56DD97 pKa = 3.98VVNTSDD103 pKa = 3.7YY104 pKa = 10.76TQMLAQLEE112 pKa = 4.43AVAALHH118 pKa = 6.19PEE120 pKa = 4.08KK121 pKa = 10.8NRR123 pKa = 11.84AGIIGTLNAQTSDD136 pKa = 3.89IIGALYY142 pKa = 10.58NYY144 pKa = 10.28DD145 pKa = 3.3IDD147 pKa = 4.52NEE149 pKa = 4.06EE150 pKa = 4.19SLADD154 pKa = 3.36AVIAIEE160 pKa = 3.97HH161 pKa = 6.32LRR163 pKa = 11.84RR164 pKa = 11.84MYY166 pKa = 9.39CTLYY170 pKa = 10.4IIAHH174 pKa = 6.47HH175 pKa = 6.8YY176 pKa = 11.0DD177 pKa = 3.15LTLYY181 pKa = 10.34EE182 pKa = 4.88CVNFAYY188 pKa = 10.47GEE190 pKa = 4.0IKK192 pKa = 10.27DD193 pKa = 4.24RR194 pKa = 11.84KK195 pKa = 9.56GEE197 pKa = 3.88MRR199 pKa = 11.84DD200 pKa = 3.34GVFVKK205 pKa = 10.47EE206 pKa = 4.09ADD208 pKa = 3.43LL209 pKa = 4.38

Molecular weight: 23.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3VVP9|C3VVP9_9CAUD Uncharacterized protein OS=Vibrio phage VP93 OX=641832 GN=VPP93_gp9 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 10.15CCLSSGLRR10 pKa = 11.84VNLKK14 pKa = 10.17CLSGCRR20 pKa = 11.84RR21 pKa = 11.84IHH23 pKa = 5.95YY24 pKa = 7.54LQQVSCTWQVIRR36 pKa = 11.84QRR38 pKa = 11.84VVVLVKK44 pKa = 9.52TSVVLRR50 pKa = 11.84MTRR53 pKa = 11.84GATLTTT59 pKa = 3.93

Molecular weight: 6.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

44

0

44

13171

30

1284

299.3

33.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.551 ± 0.614

1.359 ± 0.259

6.674 ± 0.233

6.37 ± 0.268

3.432 ± 0.157

7.091 ± 0.286

2.02 ± 0.194

4.449 ± 0.222

5.087 ± 0.295

8.838 ± 0.293

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.946 ± 0.207

4.244 ± 0.298

3.994 ± 0.226

4.252 ± 0.25

5.899 ± 0.275

5.451 ± 0.284

6.347 ± 0.231

6.818 ± 0.229

1.427 ± 0.173

3.751 ± 0.297
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski