Campylobacter sp. FMV-PI01

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Average proteome isoelectric point is 7.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1625 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6L5WKD9|A0A6L5WKD9_9PROT 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Campylobacter sp. FMV-PI01 OX=2608384 GN=F1B92_05955 PE=4 SV=1
MM1 pKa = 7.41SKK3 pKa = 10.84AMDD6 pKa = 4.13LADD9 pKa = 5.34EE10 pKa = 4.87ISDD13 pKa = 4.26SLSDD17 pKa = 3.68YY18 pKa = 11.15LNDD21 pKa = 3.5VFADD25 pKa = 3.72DD26 pKa = 4.59SLPPFHH32 pKa = 7.6DD33 pKa = 3.82NKK35 pKa = 10.0ATNPNFLDD43 pKa = 4.47PYY45 pKa = 10.09LNPFTSLTIYY55 pKa = 10.77DD56 pKa = 4.56PLILDD61 pKa = 4.71LDD63 pKa = 4.17CDD65 pKa = 4.7GIEE68 pKa = 4.22TTTLKK73 pKa = 10.95DD74 pKa = 3.39GVYY77 pKa = 10.24FDD79 pKa = 5.41HH80 pKa = 7.25NGG82 pKa = 2.96

Molecular weight: 9.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6L5WGJ4|A0A6L5WGJ4_9PROT M23 family metallopeptidase OS=Campylobacter sp. FMV-PI01 OX=2608384 GN=F1B92_03670 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.0QPHH8 pKa = 5.36KK9 pKa = 7.98TPRR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.78GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.07TKK25 pKa = 10.39NGRR28 pKa = 11.84KK29 pKa = 9.3VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1625

0

1625

491741

36

3483

302.6

34.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.727 ± 0.069

1.041 ± 0.026

5.967 ± 0.055

6.317 ± 0.07

6.059 ± 0.076

5.889 ± 0.063

1.379 ± 0.023

9.796 ± 0.074

10.069 ± 0.067

9.674 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.185 ± 0.031

7.16 ± 0.076

2.567 ± 0.032

2.499 ± 0.033

2.933 ± 0.049

6.759 ± 0.05

4.239 ± 0.048

5.234 ± 0.056

0.63 ± 0.017

3.875 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski