Streptacidiphilus bronchialis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptacidiphilus

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5673 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345T3S0|A0A345T3S0_9ACTN WYL domain-containing protein OS=Streptacidiphilus bronchialis OX=2126346 GN=C7M71_027790 PE=4 SV=1
MM1 pKa = 7.44SATEE5 pKa = 4.18PLEE8 pKa = 3.84VWIDD12 pKa = 3.44QDD14 pKa = 3.99LCTGDD19 pKa = 5.01GICAQYY25 pKa = 10.9APEE28 pKa = 4.23VFEE31 pKa = 5.9LDD33 pKa = 3.05IDD35 pKa = 3.65GLAYY39 pKa = 10.7VKK41 pKa = 10.78GADD44 pKa = 3.53EE45 pKa = 4.92EE46 pKa = 5.33LRR48 pKa = 11.84QQPGEE53 pKa = 4.28SVPVPLTVLQDD64 pKa = 3.69VVDD67 pKa = 4.16SAKK70 pKa = 10.25EE71 pKa = 3.92CPGDD75 pKa = 4.18CIHH78 pKa = 6.36VRR80 pKa = 11.84RR81 pKa = 11.84VSDD84 pKa = 3.3RR85 pKa = 11.84VEE87 pKa = 4.16VYY89 pKa = 10.89GPDD92 pKa = 3.45AEE94 pKa = 4.31

Molecular weight: 10.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345SYE6|A0A345SYE6_9ACTN DNA polymerase III subunit beta OS=Streptacidiphilus bronchialis OX=2126346 GN=C7M71_016310 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILASRR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.69GRR40 pKa = 11.84TRR42 pKa = 11.84LSAA45 pKa = 3.71

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5673

0

5673

1967069

29

7994

346.7

36.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.198 ± 0.057

0.825 ± 0.009

5.82 ± 0.024

5.413 ± 0.034

2.605 ± 0.018

9.651 ± 0.029

2.325 ± 0.016

2.968 ± 0.022

1.735 ± 0.026

10.616 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.605 ± 0.013

1.627 ± 0.02

6.449 ± 0.033

2.906 ± 0.018

8.343 ± 0.037

5.028 ± 0.032

5.981 ± 0.033

8.404 ± 0.03

1.502 ± 0.012

2.001 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski