Paracoccus lutimaris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3955 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A368YUU5|A0A368YUU5_9RHOB Thiazole synthase OS=Paracoccus lutimaris OX=1490030 GN=thiG PE=3 SV=1
MM1 pKa = 7.5SSATASATFKK11 pKa = 10.82LPPDD15 pKa = 3.4QASPTFEE22 pKa = 5.39HH23 pKa = 7.03ISGDD27 pKa = 3.8GADD30 pKa = 3.25WLYY33 pKa = 11.58GGVGNDD39 pKa = 3.84TLWGGRR45 pKa = 11.84DD46 pKa = 3.24EE47 pKa = 5.0GRR49 pKa = 11.84LFGGDD54 pKa = 3.39GNDD57 pKa = 3.74RR58 pKa = 11.84LYY60 pKa = 11.09GYY62 pKa = 10.23NNHH65 pKa = 7.28DD66 pKa = 4.13SLIGGAGNDD75 pKa = 3.74YY76 pKa = 10.55MSGGNGDD83 pKa = 3.92DD84 pKa = 3.84HH85 pKa = 8.57CDD87 pKa = 3.89GEE89 pKa = 4.81DD90 pKa = 3.66GNDD93 pKa = 4.21GIEE96 pKa = 4.28GAEE99 pKa = 4.19GTDD102 pKa = 3.15RR103 pKa = 11.84IYY105 pKa = 11.02SGEE108 pKa = 4.21GGDD111 pKa = 3.33TIVFRR116 pKa = 11.84EE117 pKa = 4.25ASHH120 pKa = 6.07SAVGAARR127 pKa = 11.84DD128 pKa = 3.94VIHH131 pKa = 7.48DD132 pKa = 4.62FDD134 pKa = 3.98TQYY137 pKa = 10.87DD138 pKa = 4.38TIQLYY143 pKa = 10.82EE144 pKa = 4.21MFDD147 pKa = 3.8FMVSIPFWNGTSAAAYY163 pKa = 9.12SVWILALGNNTLVRR177 pKa = 11.84ADD179 pKa = 3.64TTGDD183 pKa = 3.18AVADD187 pKa = 4.32FEE189 pKa = 5.24LLLAGTTGVTEE200 pKa = 4.77DD201 pKa = 3.66NFIII205 pKa = 4.78

Molecular weight: 21.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A368YWI1|A0A368YWI1_9RHOB Uncharacterized protein OS=Paracoccus lutimaris OX=1490030 GN=DFP89_1107 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84ARR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.12GGRR29 pKa = 11.84RR30 pKa = 11.84VLNARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.0GRR40 pKa = 11.84KK41 pKa = 8.91SLSAA45 pKa = 3.86

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3955

0

3955

1266796

26

3244

320.3

34.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.16 ± 0.059

0.812 ± 0.012

5.974 ± 0.037

5.538 ± 0.038

3.471 ± 0.025

8.961 ± 0.047

2.052 ± 0.018

5.147 ± 0.029

2.752 ± 0.037

10.303 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.717 ± 0.021

2.444 ± 0.027

5.516 ± 0.036

3.263 ± 0.022

7.421 ± 0.044

4.905 ± 0.025

5.145 ± 0.031

6.861 ± 0.033

1.494 ± 0.017

2.065 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski