Chryseobacterium sp. legu1

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; unclassified Chryseobacterium

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2570 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C7EUP0|A0A5C7EUP0_9FLAO YkgJ family cysteine cluster protein OS=Chryseobacterium sp. legu1 OX=2602768 GN=FUA25_09355 PE=4 SV=1
MM1 pKa = 7.49QDD3 pKa = 2.88INLKK7 pKa = 8.51ITDD10 pKa = 3.89RR11 pKa = 11.84NGEE14 pKa = 3.81IHH16 pKa = 6.79EE17 pKa = 4.61VVAPTDD23 pKa = 3.19MSMNLMEE30 pKa = 4.84VIRR33 pKa = 11.84SYY35 pKa = 11.43EE36 pKa = 3.86LADD39 pKa = 3.65EE40 pKa = 4.45GTIGVCGGMAMCASCQVYY58 pKa = 10.18VLEE61 pKa = 4.71GSEE64 pKa = 4.35KK65 pKa = 9.89LVEE68 pKa = 4.37MGDD71 pKa = 3.77EE72 pKa = 4.09EE73 pKa = 5.23DD74 pKa = 4.81AMLAEE79 pKa = 4.64AFHH82 pKa = 6.09VQDD85 pKa = 4.36HH86 pKa = 6.43SRR88 pKa = 11.84LGCQIHH94 pKa = 5.78ITEE97 pKa = 5.18EE98 pKa = 3.9IDD100 pKa = 3.52GLEE103 pKa = 4.24VAIAPYY109 pKa = 9.81PP110 pKa = 3.58

Molecular weight: 12.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C7F5R0|A0A5C7F5R0_9FLAO Uncharacterized protein OS=Chryseobacterium sp. legu1 OX=2602768 GN=FUA25_06880 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.03RR4 pKa = 11.84TFQPSEE10 pKa = 3.58RR11 pKa = 11.84KK12 pKa = 9.37KK13 pKa = 10.2RR14 pKa = 11.84NKK16 pKa = 9.71HH17 pKa = 4.09GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.02GRR40 pKa = 11.84KK41 pKa = 8.75SLSISSARR49 pKa = 11.84AKK51 pKa = 10.43RR52 pKa = 3.43

Molecular weight: 6.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2570

0

2570

821522

25

2325

319.7

36.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.593 ± 0.052

0.731 ± 0.014

5.318 ± 0.034

6.827 ± 0.063

5.562 ± 0.047

6.416 ± 0.042

1.74 ± 0.025

7.616 ± 0.052

7.943 ± 0.056

9.234 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.487 ± 0.028

5.927 ± 0.049

3.507 ± 0.027

3.436 ± 0.024

3.57 ± 0.03

6.429 ± 0.046

5.627 ± 0.068

6.126 ± 0.04

1.009 ± 0.017

3.903 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski