Clostridium tarantellae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Clostridium

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3225 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I1MR54|A0A6I1MR54_9CLOT MarR family transcriptional regulator OS=Clostridium tarantellae OX=39493 GN=GBZ86_14555 PE=4 SV=1
MM1 pKa = 7.29KK2 pKa = 10.47AVVDD6 pKa = 3.74KK7 pKa = 10.4DD8 pKa = 3.67LCIGCGLCEE17 pKa = 4.25STCPEE22 pKa = 4.1VFSIGDD28 pKa = 3.68DD29 pKa = 3.69GKK31 pKa = 10.92SQAISEE37 pKa = 5.0DD38 pKa = 3.26IPKK41 pKa = 10.19EE42 pKa = 3.96FEE44 pKa = 4.47DD45 pKa = 3.88NAVEE49 pKa = 4.6ASTNCPVGAITIEE62 pKa = 3.94

Molecular weight: 6.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I1MID3|A0A6I1MID3_9CLOT Oxidoreductase OS=Clostridium tarantellae OX=39493 GN=GBZ86_02745 PE=4 SV=1
MM1 pKa = 7.53SRR3 pKa = 11.84RR4 pKa = 11.84CEE6 pKa = 3.79ICDD9 pKa = 3.31KK10 pKa = 11.1GVVSGKK16 pKa = 10.1QYY18 pKa = 10.63SHH20 pKa = 6.33SHH22 pKa = 5.27RR23 pKa = 11.84QSNRR27 pKa = 11.84TWAPNIKK34 pKa = 9.58KK35 pKa = 10.2VKK37 pKa = 10.08AIVKK41 pKa = 7.32GTPKK45 pKa = 9.67TVHH48 pKa = 4.9VCTRR52 pKa = 11.84CLRR55 pKa = 11.84SGKK58 pKa = 7.37VQRR61 pKa = 11.84AII63 pKa = 3.7

Molecular weight: 7.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3225

0

3225

1102011

19

4519

341.7

38.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.987 ± 0.048

1.141 ± 0.018

5.296 ± 0.044

7.315 ± 0.059

4.59 ± 0.036

6.145 ± 0.05

1.299 ± 0.021

10.374 ± 0.058

9.651 ± 0.061

9.067 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.24 ± 0.022

7.756 ± 0.058

2.743 ± 0.03

2.084 ± 0.018

2.86 ± 0.027

6.294 ± 0.04

5.178 ± 0.054

6.032 ± 0.041

0.736 ± 0.018

4.212 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski