Dissulfurirhabdus thermomarina

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Deltaproteobacteria incertae sedis; Dissulfurirhabdaceae; Dissulfurirhabdus

Average proteome isoelectric point is 7.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2522 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6N9TJ36|A0A6N9TJ36_9DELT Terminase OS=Dissulfurirhabdus thermomarina OX=1765737 GN=G3N55_00170 PE=4 SV=1
MM1 pKa = 7.86ALRR4 pKa = 11.84DD5 pKa = 3.91YY6 pKa = 11.43LDD8 pKa = 5.14ADD10 pKa = 4.59LATCLDD16 pKa = 4.05PGEE19 pKa = 4.73FGVDD23 pKa = 3.12ATYY26 pKa = 10.18TPAAGQPVVLAGILEE41 pKa = 4.35AGYY44 pKa = 10.01AASEE48 pKa = 4.16EE49 pKa = 4.26VGPGGVSVEE58 pKa = 4.04GLRR61 pKa = 11.84PILTCRR67 pKa = 11.84EE68 pKa = 3.77LDD70 pKa = 3.62LPAGAGHH77 pKa = 7.15GDD79 pKa = 3.42QVAIGSDD86 pKa = 3.78LYY88 pKa = 11.16SVVGIEE94 pKa = 3.78PDD96 pKa = 3.6GYY98 pKa = 11.42GLVALVLEE106 pKa = 4.72RR107 pKa = 11.84TT108 pKa = 3.9

Molecular weight: 10.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6N9TYB4|A0A6N9TYB4_9DELT Universal stress protein OS=Dissulfurirhabdus thermomarina OX=1765737 GN=G3N55_11510 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.58RR3 pKa = 11.84TFQPSLTKK11 pKa = 10.38RR12 pKa = 11.84KK13 pKa = 7.81RR14 pKa = 11.84THH16 pKa = 6.26GFRR19 pKa = 11.84QRR21 pKa = 11.84MSTKK25 pKa = 10.23AGRR28 pKa = 11.84KK29 pKa = 7.71VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.97GRR39 pKa = 11.84KK40 pKa = 8.76RR41 pKa = 11.84LAGG44 pKa = 3.61

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2522

0

2522

769361

25

2333

305.1

33.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.785 ± 0.075

1.206 ± 0.024

5.289 ± 0.033

6.75 ± 0.051

3.546 ± 0.03

9.227 ± 0.048

2.117 ± 0.026

3.758 ± 0.04

2.687 ± 0.044

11.003 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.892 ± 0.023

1.893 ± 0.027

5.997 ± 0.041

2.237 ± 0.026

9.603 ± 0.056

3.821 ± 0.029

4.393 ± 0.034

8.224 ± 0.048

1.271 ± 0.019

2.301 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski