Klebsiella phage SH-Kp 152410

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Przondovirus; Klebsiella virus SHKp152410

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 48 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K9VGZ2|A0A2K9VGZ2_9CAUD HNHc domain-containing protein OS=Klebsiella phage SH-Kp 152410 OX=2066504 GN=2410_orf00015 PE=4 SV=1
MM1 pKa = 7.4NPSDD5 pKa = 3.87WCRR8 pKa = 11.84EE9 pKa = 4.05MYY11 pKa = 10.1EE12 pKa = 4.17KK13 pKa = 10.16TLDD16 pKa = 3.46PAYY19 pKa = 9.07ITLYY23 pKa = 11.1NMWKK27 pKa = 9.04EE28 pKa = 3.82WEE30 pKa = 4.06DD31 pKa = 3.21AKK33 pKa = 11.1FVVTVEE39 pKa = 4.22TANASYY45 pKa = 10.04EE46 pKa = 4.28LPVHH50 pKa = 6.68AGSLEE55 pKa = 3.95EE56 pKa = 4.04ALEE59 pKa = 4.21VAEE62 pKa = 5.48AEE64 pKa = 4.25YY65 pKa = 11.2EE66 pKa = 4.05EE67 pKa = 5.11LGQVTRR73 pKa = 11.84VRR75 pKa = 11.84PDD77 pKa = 2.73SHH79 pKa = 7.55

Molecular weight: 9.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K9VGX8|A0A2K9VGX8_9CAUD Internal virion protein gp14 OS=Klebsiella phage SH-Kp 152410 OX=2066504 GN=2410_orf00037 PE=3 SV=1
MM1 pKa = 7.42IKK3 pKa = 10.61YY4 pKa = 10.27GITLEE9 pKa = 3.94DD10 pKa = 3.01LKK12 pKa = 11.18YY13 pKa = 10.3YY14 pKa = 10.63RR15 pKa = 11.84FALMHH20 pKa = 6.54GKK22 pKa = 8.27HH23 pKa = 6.49HH24 pKa = 7.75DD25 pKa = 3.81YY26 pKa = 11.59LMAALRR32 pKa = 11.84QTKK35 pKa = 8.75WGYY38 pKa = 11.3SMSLRR43 pKa = 11.84IDD45 pKa = 3.28TRR47 pKa = 11.84HH48 pKa = 5.6IRR50 pKa = 11.84AAQLAMAYY58 pKa = 9.22GASDD62 pKa = 3.87ALTKK66 pKa = 10.57RR67 pKa = 11.84ILTKK71 pKa = 9.95HH72 pKa = 6.13RR73 pKa = 11.84KK74 pKa = 5.46MTARR78 pKa = 11.84QAACAVKK85 pKa = 9.55WARR88 pKa = 11.84LTLLSYY94 pKa = 10.47QQ95 pKa = 3.58

Molecular weight: 11.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

47

1

48

12204

36

1322

254.3

28.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.005 ± 0.47

0.967 ± 0.155

6.4 ± 0.184

6.735 ± 0.457

3.614 ± 0.193

8.014 ± 0.336

1.942 ± 0.203

5.023 ± 0.153

6.85 ± 0.368

8.12 ± 0.291

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.663 ± 0.194

4.351 ± 0.275

3.728 ± 0.181

4.072 ± 0.355

5.31 ± 0.192

6.088 ± 0.31

5.457 ± 0.301

6.695 ± 0.362

1.409 ± 0.163

3.556 ± 0.202
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski