Amino acid dipepetide frequency for Sclerotinia sclerotiorum megabirnavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.641AlaAla: 12.641 ± 2.145
1.609AlaCys: 1.609 ± 0.606
7.355AlaAsp: 7.355 ± 1.218
6.665AlaGlu: 6.665 ± 2.258
2.758AlaPhe: 2.758 ± 1.023
8.963AlaGly: 8.963 ± 2.424
2.988AlaHis: 2.988 ± 0.733
3.677AlaIle: 3.677 ± 0.987
2.068AlaLys: 2.068 ± 0.703
8.963AlaLeu: 8.963 ± 0.814
3.677AlaMet: 3.677 ± 1.123
7.584AlaAsn: 7.584 ± 2.118
5.286AlaPro: 5.286 ± 1.489
4.137AlaGln: 4.137 ± 1.058
6.665AlaArg: 6.665 ± 1.191
4.826AlaSer: 4.826 ± 0.142
5.516AlaThr: 5.516 ± 1.248
8.963AlaVal: 8.963 ± 1.403
0.919AlaTrp: 0.919 ± 0.403
2.298AlaTyr: 2.298 ± 0.649
0.0AlaXaa: 0.0 ± 0.0
Cys
1.149CysAla: 1.149 ± 0.296
0.0CysCys: 0.0 ± 0.0
1.379CysAsp: 1.379 ± 0.338
0.46CysGlu: 0.46 ± 0.395
0.23CysPhe: 0.23 ± 0.35
1.839CysGly: 1.839 ± 0.336
0.0CysHis: 0.0 ± 0.0
0.689CysIle: 0.689 ± 0.355
0.23CysLys: 0.23 ± 0.35
1.839CysLeu: 1.839 ± 0.75
0.0CysMet: 0.0 ± 0.0
0.23CysAsn: 0.23 ± 0.35
0.46CysPro: 0.46 ± 0.229
0.46CysGln: 0.46 ± 0.442
1.839CysArg: 1.839 ± 0.682
0.46CysSer: 0.46 ± 0.32
0.46CysThr: 0.46 ± 0.194
1.379CysVal: 1.379 ± 0.298
0.23CysTrp: 0.23 ± 0.16
0.919CysTyr: 0.919 ± 0.64
0.0CysXaa: 0.0 ± 0.0
Asp
7.584AspAla: 7.584 ± 1.162
0.689AspCys: 0.689 ± 0.405
4.597AspAsp: 4.597 ± 0.654
2.528AspGlu: 2.528 ± 0.93
3.447AspPhe: 3.447 ± 1.471
6.205AspGly: 6.205 ± 0.972
1.379AspHis: 1.379 ± 0.298
1.379AspIle: 1.379 ± 0.916
2.068AspLys: 2.068 ± 0.568
6.435AspLeu: 6.435 ± 1.192
1.609AspMet: 1.609 ± 0.265
1.609AspAsn: 1.609 ± 0.713
2.528AspPro: 2.528 ± 0.39
2.298AspGln: 2.298 ± 0.651
2.758AspArg: 2.758 ± 0.476
2.758AspSer: 2.758 ± 0.614
1.149AspThr: 1.149 ± 0.249
7.584AspVal: 7.584 ± 0.687
0.919AspTrp: 0.919 ± 0.388
1.379AspTyr: 1.379 ± 0.227
0.0AspXaa: 0.0 ± 0.0
Glu
4.826GluAla: 4.826 ± 1.302
0.46GluCys: 0.46 ± 0.189
2.988GluAsp: 2.988 ± 0.81
2.528GluGlu: 2.528 ± 1.269
2.298GluPhe: 2.298 ± 0.5
3.907GluGly: 3.907 ± 0.364
1.609GluHis: 1.609 ± 0.735
3.447GluIle: 3.447 ± 0.433
1.149GluLys: 1.149 ± 0.296
6.205GluLeu: 6.205 ± 0.102
1.149GluMet: 1.149 ± 0.642
1.379GluAsn: 1.379 ± 0.233
1.839GluPro: 1.839 ± 0.514
3.447GluGln: 3.447 ± 1.09
3.218GluArg: 3.218 ± 0.53
2.758GluSer: 2.758 ± 0.691
2.298GluThr: 2.298 ± 0.524
3.907GluVal: 3.907 ± 1.189
0.919GluTrp: 0.919 ± 0.411
1.609GluTyr: 1.609 ± 0.486
0.0GluXaa: 0.0 ± 0.0
Phe
3.907PheAla: 3.907 ± 0.674
0.689PheCys: 0.689 ± 0.365
1.149PheAsp: 1.149 ± 0.296
3.218PheGlu: 3.218 ± 0.809
1.839PhePhe: 1.839 ± 1.021
2.528PheGly: 2.528 ± 0.634
0.23PheHis: 0.23 ± 0.16
1.149PheIle: 1.149 ± 0.464
0.919PheLys: 0.919 ± 0.256
2.528PheLeu: 2.528 ± 1.247
0.23PheMet: 0.23 ± 0.16
2.528PheAsn: 2.528 ± 0.804
1.839PhePro: 1.839 ± 0.675
1.149PheGln: 1.149 ± 0.577
2.988PheArg: 2.988 ± 0.81
2.758PheSer: 2.758 ± 0.894
1.149PheThr: 1.149 ± 0.464
2.758PheVal: 2.758 ± 0.465
0.46PheTrp: 0.46 ± 0.189
0.689PheTyr: 0.689 ± 0.114
0.0PheXaa: 0.0 ± 0.0
Gly
8.044GlyAla: 8.044 ± 1.878
0.689GlyCys: 0.689 ± 0.279
5.746GlyAsp: 5.746 ± 0.649
4.137GlyGlu: 4.137 ± 0.422
2.528GlyPhe: 2.528 ± 1.395
5.746GlyGly: 5.746 ± 1.116
3.447GlyHis: 3.447 ± 0.446
2.528GlyIle: 2.528 ± 0.614
2.528GlyLys: 2.528 ± 0.74
4.137GlyLeu: 4.137 ± 0.708
1.839GlyMet: 1.839 ± 0.447
2.298GlyAsn: 2.298 ± 0.916
2.298GlyPro: 2.298 ± 0.651
3.447GlyGln: 3.447 ± 0.478
5.746GlyArg: 5.746 ± 1.035
5.746GlySer: 5.746 ± 0.61
5.976GlyThr: 5.976 ± 1.321
5.746GlyVal: 5.746 ± 1.06
1.379GlyTrp: 1.379 ± 0.445
2.298GlyTyr: 2.298 ± 0.332
0.0GlyXaa: 0.0 ± 0.0
His
3.907HisAla: 3.907 ± 0.229
0.919HisCys: 0.919 ± 0.469
2.068HisAsp: 2.068 ± 0.354
0.919HisGlu: 0.919 ± 0.64
1.149HisPhe: 1.149 ± 0.3
1.149HisGly: 1.149 ± 0.442
0.919HisHis: 0.919 ± 0.37
1.149HisIle: 1.149 ± 0.464
0.689HisLys: 0.689 ± 0.357
2.528HisLeu: 2.528 ± 0.368
0.689HisMet: 0.689 ± 0.365
0.23HisAsn: 0.23 ± 0.16
1.149HisPro: 1.149 ± 0.529
0.919HisGln: 0.919 ± 0.256
1.379HisArg: 1.379 ± 0.387
1.839HisSer: 1.839 ± 0.65
1.609HisThr: 1.609 ± 0.799
1.609HisVal: 1.609 ± 0.866
0.23HisTrp: 0.23 ± 0.221
0.23HisTyr: 0.23 ± 0.196
0.0HisXaa: 0.0 ± 0.0
Ile
3.447IleAla: 3.447 ± 0.694
0.689IleCys: 0.689 ± 0.433
1.379IleAsp: 1.379 ± 0.289
2.068IleGlu: 2.068 ± 0.341
0.0IlePhe: 0.0 ± 0.0
2.298IleGly: 2.298 ± 1.116
0.23IleHis: 0.23 ± 0.16
0.919IleIle: 0.919 ± 0.42
1.149IleLys: 1.149 ± 0.359
3.218IleLeu: 3.218 ± 1.012
0.919IleMet: 0.919 ± 0.256
2.528IleAsn: 2.528 ± 0.802
2.298IlePro: 2.298 ± 0.332
1.379IleGln: 1.379 ± 0.581
2.298IleArg: 2.298 ± 0.868
4.367IleSer: 4.367 ± 0.732
2.758IleThr: 2.758 ± 0.747
1.839IleVal: 1.839 ± 0.676
1.149IleTrp: 1.149 ± 0.405
1.149IleTyr: 1.149 ± 0.577
0.0IleXaa: 0.0 ± 0.0
Lys
2.988LysAla: 2.988 ± 0.244
0.689LysCys: 0.689 ± 0.355
0.23LysAsp: 0.23 ± 0.196
1.609LysGlu: 1.609 ± 0.395
0.46LysPhe: 0.46 ± 0.194
2.068LysGly: 2.068 ± 0.45
0.0LysHis: 0.0 ± 0.0
0.689LysIle: 0.689 ± 0.48
0.919LysLys: 0.919 ± 0.384
2.068LysLeu: 2.068 ± 0.264
0.46LysMet: 0.46 ± 0.36
0.46LysAsn: 0.46 ± 0.229
0.919LysPro: 0.919 ± 0.786
2.068LysGln: 2.068 ± 0.597
2.988LysArg: 2.988 ± 0.816
1.379LysSer: 1.379 ± 0.568
0.919LysThr: 0.919 ± 0.595
1.839LysVal: 1.839 ± 0.712
0.46LysTrp: 0.46 ± 0.189
1.379LysTyr: 1.379 ± 0.702
0.0LysXaa: 0.0 ± 0.0
Leu
9.883LeuAla: 9.883 ± 2.011
0.689LeuCys: 0.689 ± 0.279
5.516LeuAsp: 5.516 ± 1.084
3.677LeuGlu: 3.677 ± 0.857
3.218LeuPhe: 3.218 ± 0.628
7.125LeuGly: 7.125 ± 1.359
2.068LeuHis: 2.068 ± 0.565
4.137LeuIle: 4.137 ± 1.114
0.919LeuLys: 0.919 ± 0.157
10.802LeuLeu: 10.802 ± 1.566
2.068LeuMet: 2.068 ± 0.446
4.137LeuAsn: 4.137 ± 1.242
3.677LeuPro: 3.677 ± 0.672
3.677LeuGln: 3.677 ± 0.833
8.734LeuArg: 8.734 ± 1.627
7.355LeuSer: 7.355 ± 2.063
5.976LeuThr: 5.976 ± 1.385
4.826LeuVal: 4.826 ± 1.003
2.758LeuTrp: 2.758 ± 0.989
2.988LeuTyr: 2.988 ± 0.502
0.0LeuXaa: 0.0 ± 0.0
Met
3.677MetAla: 3.677 ± 0.657
0.46MetCys: 0.46 ± 0.32
0.919MetAsp: 0.919 ± 0.388
0.23MetGlu: 0.23 ± 0.221
1.609MetPhe: 1.609 ± 0.421
1.609MetGly: 1.609 ± 0.395
1.149MetHis: 1.149 ± 0.442
1.149MetIle: 1.149 ± 0.324
0.23MetLys: 0.23 ± 0.196
2.758MetLeu: 2.758 ± 0.433
1.839MetMet: 1.839 ± 0.429
1.149MetAsn: 1.149 ± 0.3
1.379MetPro: 1.379 ± 0.728
0.919MetGln: 0.919 ± 0.379
4.367MetArg: 4.367 ± 0.869
1.379MetSer: 1.379 ± 0.687
1.609MetThr: 1.609 ± 0.265
2.758MetVal: 2.758 ± 0.395
0.0MetTrp: 0.0 ± 0.0
1.379MetTyr: 1.379 ± 0.445
0.0MetXaa: 0.0 ± 0.0
Asn
5.286AsnAla: 5.286 ± 1.583
0.46AsnCys: 0.46 ± 0.36
3.447AsnAsp: 3.447 ± 0.905
1.609AsnGlu: 1.609 ± 0.222
1.609AsnPhe: 1.609 ± 0.395
3.447AsnGly: 3.447 ± 0.719
0.689AsnHis: 0.689 ± 0.291
2.068AsnIle: 2.068 ± 0.487
1.609AsnLys: 1.609 ± 0.395
3.677AsnLeu: 3.677 ± 1.039
0.919AsnMet: 0.919 ± 0.52
1.379AsnAsn: 1.379 ± 0.568
1.839AsnPro: 1.839 ± 0.296
1.379AsnGln: 1.379 ± 0.387
3.218AsnArg: 3.218 ± 1.147
3.218AsnSer: 3.218 ± 0.419
1.839AsnThr: 1.839 ± 0.788
4.597AsnVal: 4.597 ± 1.155
0.689AsnTrp: 0.689 ± 0.351
1.379AsnTyr: 1.379 ± 0.574
0.0AsnXaa: 0.0 ± 0.0
Pro
5.056ProAla: 5.056 ± 0.719
0.23ProCys: 0.23 ± 0.221
1.379ProAsp: 1.379 ± 0.298
2.298ProGlu: 2.298 ± 0.561
0.46ProPhe: 0.46 ± 0.32
3.218ProGly: 3.218 ± 1.292
1.609ProHis: 1.609 ± 0.573
1.149ProIle: 1.149 ± 0.442
1.149ProLys: 1.149 ± 0.55
3.907ProLeu: 3.907 ± 1.094
1.839ProMet: 1.839 ± 0.563
2.528ProAsn: 2.528 ± 0.489
1.379ProPro: 1.379 ± 0.711
1.609ProGln: 1.609 ± 0.449
2.068ProArg: 2.068 ± 0.622
2.068ProSer: 2.068 ± 0.164
4.597ProThr: 4.597 ± 0.963
0.919ProVal: 0.919 ± 0.296
0.23ProTrp: 0.23 ± 0.221
0.46ProTyr: 0.46 ± 0.194
0.0ProXaa: 0.0 ± 0.0
Gln
3.218GlnAla: 3.218 ± 0.45
0.689GlnCys: 0.689 ± 0.291
2.068GlnAsp: 2.068 ± 0.505
0.23GlnGlu: 0.23 ± 0.16
1.149GlnPhe: 1.149 ± 0.566
1.839GlnGly: 1.839 ± 0.296
1.379GlnHis: 1.379 ± 0.492
0.689GlnIle: 0.689 ± 0.279
0.46GlnLys: 0.46 ± 0.229
5.286GlnLeu: 5.286 ± 0.412
1.379GlnMet: 1.379 ± 0.407
1.379GlnAsn: 1.379 ± 0.581
0.689GlnPro: 0.689 ± 0.328
1.839GlnGln: 1.839 ± 0.388
3.907GlnArg: 3.907 ± 1.429
2.528GlnSer: 2.528 ± 0.683
2.988GlnThr: 2.988 ± 0.51
3.907GlnVal: 3.907 ± 0.915
0.689GlnTrp: 0.689 ± 0.114
1.839GlnTyr: 1.839 ± 0.333
0.0GlnXaa: 0.0 ± 0.0
Arg
9.193ArgAla: 9.193 ± 2.999
0.919ArgCys: 0.919 ± 0.256
5.056ArgAsp: 5.056 ± 0.583
5.056ArgGlu: 5.056 ± 0.993
2.988ArgPhe: 2.988 ± 0.549
3.447ArgGly: 3.447 ± 0.544
1.839ArgHis: 1.839 ± 0.726
3.218ArgIle: 3.218 ± 0.938
2.298ArgLys: 2.298 ± 0.524
7.584ArgLeu: 7.584 ± 0.509
2.528ArgMet: 2.528 ± 0.435
4.826ArgAsn: 4.826 ± 0.891
1.839ArgPro: 1.839 ± 0.37
2.068ArgGln: 2.068 ± 0.557
6.435ArgArg: 6.435 ± 0.406
4.597ArgSer: 4.597 ± 1.798
4.137ArgThr: 4.137 ± 1.446
5.746ArgVal: 5.746 ± 0.707
1.839ArgTrp: 1.839 ± 0.543
2.298ArgTyr: 2.298 ± 0.797
0.0ArgXaa: 0.0 ± 0.0
Ser
6.665SerAla: 6.665 ± 1.277
0.689SerCys: 0.689 ± 0.433
4.137SerAsp: 4.137 ± 1.063
3.677SerGlu: 3.677 ± 0.32
3.447SerPhe: 3.447 ± 0.745
6.435SerGly: 6.435 ± 0.6
0.919SerHis: 0.919 ± 0.296
1.839SerIle: 1.839 ± 0.945
1.609SerLys: 1.609 ± 0.799
5.056SerLeu: 5.056 ± 1.366
2.068SerMet: 2.068 ± 1.09
2.528SerAsn: 2.528 ± 0.756
2.758SerPro: 2.758 ± 0.96
2.298SerGln: 2.298 ± 1.004
3.907SerArg: 3.907 ± 0.817
3.677SerSer: 3.677 ± 1.074
4.137SerThr: 4.137 ± 0.803
4.137SerVal: 4.137 ± 0.803
1.609SerTrp: 1.609 ± 0.407
2.758SerTyr: 2.758 ± 0.16
0.0SerXaa: 0.0 ± 0.0
Thr
4.826ThrAla: 4.826 ± 0.634
1.149ThrCys: 1.149 ± 0.25
4.367ThrAsp: 4.367 ± 0.806
2.298ThrGlu: 2.298 ± 0.797
2.068ThrPhe: 2.068 ± 0.676
5.516ThrGly: 5.516 ± 1.2
1.149ThrHis: 1.149 ± 0.442
2.298ThrIle: 2.298 ± 0.451
2.068ThrLys: 2.068 ± 0.568
5.976ThrLeu: 5.976 ± 0.837
2.988ThrMet: 2.988 ± 0.51
1.379ThrAsn: 1.379 ± 0.73
2.298ThrPro: 2.298 ± 0.5
1.609ThrGln: 1.609 ± 0.432
4.137ThrArg: 4.137 ± 1.174
3.677ThrSer: 3.677 ± 0.982
3.677ThrThr: 3.677 ± 0.377
3.218ThrVal: 3.218 ± 1.244
1.379ThrTrp: 1.379 ± 0.568
1.839ThrTyr: 1.839 ± 0.676
0.0ThrXaa: 0.0 ± 0.0
Val
5.976ValAla: 5.976 ± 0.565
1.609ValCys: 1.609 ± 0.594
4.826ValAsp: 4.826 ± 0.66
5.976ValGlu: 5.976 ± 1.014
2.068ValPhe: 2.068 ± 0.758
5.976ValGly: 5.976 ± 1.321
1.839ValHis: 1.839 ± 0.336
2.298ValIle: 2.298 ± 0.93
2.298ValLys: 2.298 ± 0.853
6.205ValLeu: 6.205 ± 1.415
2.758ValMet: 2.758 ± 0.876
2.068ValAsn: 2.068 ± 0.446
3.218ValPro: 3.218 ± 1.144
2.298ValGln: 2.298 ± 0.692
8.044ValArg: 8.044 ± 1.329
5.056ValSer: 5.056 ± 0.959
3.677ValThr: 3.677 ± 1.612
4.597ValVal: 4.597 ± 0.894
0.919ValTrp: 0.919 ± 0.718
2.298ValTyr: 2.298 ± 0.434
0.0ValXaa: 0.0 ± 0.0
Trp
1.379TrpAla: 1.379 ± 0.73
0.23TrpCys: 0.23 ± 0.16
1.379TrpAsp: 1.379 ± 0.449
0.689TrpGlu: 0.689 ± 0.279
0.689TrpPhe: 0.689 ± 0.114
0.46TrpGly: 0.46 ± 0.393
0.46TrpHis: 0.46 ± 0.189
0.689TrpIle: 0.689 ± 0.536
0.0TrpLys: 0.0 ± 0.0
1.839TrpLeu: 1.839 ± 0.619
0.919TrpMet: 0.919 ± 0.54
1.609TrpAsn: 1.609 ± 0.205
0.23TrpPro: 0.23 ± 0.16
0.46TrpGln: 0.46 ± 0.194
1.839TrpArg: 1.839 ± 0.768
1.149TrpSer: 1.149 ± 0.453
1.149TrpThr: 1.149 ± 0.579
1.379TrpVal: 1.379 ± 0.227
0.23TrpTrp: 0.23 ± 0.221
0.919TrpTyr: 0.919 ± 0.429
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.907TyrAla: 3.907 ± 0.718
0.689TyrCys: 0.689 ± 0.279
0.919TyrAsp: 0.919 ± 0.157
2.068TyrGlu: 2.068 ± 0.557
0.689TyrPhe: 0.689 ± 0.114
2.758TyrGly: 2.758 ± 0.406
1.379TyrHis: 1.379 ± 0.702
0.919TyrIle: 0.919 ± 0.469
0.23TyrLys: 0.23 ± 0.221
3.218TyrLeu: 3.218 ± 0.582
0.46TyrMet: 0.46 ± 0.397
2.528TyrAsn: 2.528 ± 0.721
0.23TyrPro: 0.23 ± 0.16
0.689TyrGln: 0.689 ± 0.383
1.379TyrArg: 1.379 ± 0.599
2.758TyrSer: 2.758 ± 0.399
2.298TyrThr: 2.298 ± 0.629
2.298TyrVal: 2.298 ± 0.251
0.689TyrTrp: 0.689 ± 0.405
0.919TyrTyr: 0.919 ± 0.458
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (4352 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski