Strigomonas culicis

Taxonomy: cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Strigomonadinae; Strigomonas

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9986 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S9TIR3|S9TIR3_9TRYP Uncharacterized protein OS=Strigomonas culicis OX=28005 GN=STCU_10281 PE=4 SV=1
MM1 pKa = 8.1DD2 pKa = 5.55APLFNINDD10 pKa = 4.58PLPAPPTNQPPHH22 pKa = 6.07PTSGGSGADD31 pKa = 3.21VDD33 pKa = 5.05PYY35 pKa = 11.33DD36 pKa = 4.22SSGVDD41 pKa = 2.94TADD44 pKa = 4.83RR45 pKa = 11.84SVCCDD50 pKa = 3.37SDD52 pKa = 4.05SSSDD56 pKa = 3.24GSHH59 pKa = 6.92RR60 pKa = 11.84FHH62 pKa = 6.87QLHH65 pKa = 6.32SPQNPTEE72 pKa = 4.25RR73 pKa = 11.84SSMMYY78 pKa = 10.22SSASADD84 pKa = 3.61SLHH87 pKa = 6.53PSSWDD92 pKa = 3.51EE93 pKa = 3.8YY94 pKa = 10.7STDD97 pKa = 3.46SDD99 pKa = 3.9GG100 pKa = 4.63

Molecular weight: 10.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S9TEA4|S9TEA4_9TRYP Uncharacterized protein OS=Strigomonas culicis OX=28005 GN=STCU_12149 PE=4 SV=1
MM1 pKa = 7.42SARR4 pKa = 11.84ARR6 pKa = 11.84AAAASVRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84PTSPRR20 pKa = 11.84PRR22 pKa = 11.84RR23 pKa = 11.84SCRR26 pKa = 11.84ATRR29 pKa = 11.84RR30 pKa = 11.84APRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SPCRR39 pKa = 11.84WPEE42 pKa = 3.58MRR44 pKa = 11.84PRR46 pKa = 11.84QPTYY50 pKa = 10.73CSGSAAAPPRR60 pKa = 11.84WRR62 pKa = 11.84RR63 pKa = 11.84RR64 pKa = 11.84PARR67 pKa = 11.84RR68 pKa = 11.84FPGRR72 pKa = 11.84ARR74 pKa = 11.84RR75 pKa = 11.84SPAPWRR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 11.84RR84 pKa = 11.84VAVVRR89 pKa = 11.84TASAPRR95 pKa = 11.84SRR97 pKa = 11.84RR98 pKa = 11.84APRR101 pKa = 11.84TAGRR105 pKa = 11.84GCPRR109 pKa = 11.84GRR111 pKa = 11.84ARR113 pKa = 11.84GPSASRR119 pKa = 11.84ARR121 pKa = 11.84RR122 pKa = 11.84AAPPPRR128 pKa = 11.84RR129 pKa = 11.84AAAAGGPPTATRR141 pKa = 11.84GAAAARR147 pKa = 11.84RR148 pKa = 11.84RR149 pKa = 11.84ATARR153 pKa = 11.84RR154 pKa = 11.84TSARR158 pKa = 11.84SRR160 pKa = 11.84RR161 pKa = 11.84RR162 pKa = 11.84WSCCCSSGRR171 pKa = 11.84RR172 pKa = 11.84SRR174 pKa = 11.84RR175 pKa = 11.84PRR177 pKa = 11.84PRR179 pKa = 11.84SARR182 pKa = 11.84TRR184 pKa = 11.84RR185 pKa = 11.84PTRR188 pKa = 11.84AARR191 pKa = 11.84TAGGRR196 pKa = 11.84TTRR199 pKa = 11.84RR200 pKa = 11.84RR201 pKa = 11.84APPPSIARR209 pKa = 11.84GTAAIGARR217 pKa = 11.84RR218 pKa = 11.84TTAIGARR225 pKa = 11.84RR226 pKa = 11.84TAAIGARR233 pKa = 11.84RR234 pKa = 11.84TAAISTRR241 pKa = 11.84RR242 pKa = 11.84AAAIRR247 pKa = 11.84ARR249 pKa = 11.84RR250 pKa = 11.84TAAISARR257 pKa = 11.84RR258 pKa = 11.84TAAISARR265 pKa = 11.84RR266 pKa = 11.84TTAPAPAARR275 pKa = 11.84SRR277 pKa = 11.84TAAARR282 pKa = 11.84PPPPVRR288 pKa = 11.84RR289 pKa = 11.84APAAPRR295 pKa = 11.84GSAPRR300 pKa = 11.84RR301 pKa = 11.84RR302 pKa = 11.84RR303 pKa = 11.84RR304 pKa = 11.84TASASGRR311 pKa = 11.84RR312 pKa = 11.84RR313 pKa = 11.84RR314 pKa = 11.84RR315 pKa = 11.84RR316 pKa = 11.84PRR318 pKa = 11.84RR319 pKa = 11.84PPKK322 pKa = 9.84RR323 pKa = 11.84SPRR326 pKa = 11.84RR327 pKa = 11.84AAAPPRR333 pKa = 11.84ARR335 pKa = 11.84APGRR339 pKa = 11.84PPPRR343 pKa = 11.84RR344 pKa = 11.84TSPLRR349 pKa = 11.84CSAASARR356 pKa = 11.84SWTSS360 pKa = 2.74

Molecular weight: 39.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9986

0

9986

3821174

47

4543

382.7

42.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.881 ± 0.041

1.868 ± 0.014

5.221 ± 0.018

6.406 ± 0.025

3.878 ± 0.017

6.286 ± 0.024

2.709 ± 0.013

3.972 ± 0.019

4.6 ± 0.021

9.673 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.43 ± 0.01

3.297 ± 0.017

5.11 ± 0.024

3.954 ± 0.017

6.989 ± 0.032

6.822 ± 0.03

5.589 ± 0.018

7.287 ± 0.02

1.061 ± 0.008

2.915 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski