Paenibacillus antarcticus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4663 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A162QGE7|A0A162QGE7_9BACL ABC transporter ATP-binding protein OS=Paenibacillus antarcticus OX=253703 GN=PBAT_01455 PE=4 SV=1
MM1 pKa = 7.52NYY3 pKa = 9.68IDD5 pKa = 4.5IEE7 pKa = 4.51KK8 pKa = 10.78NLIPYY13 pKa = 10.18RR14 pKa = 11.84FDD16 pKa = 3.12VSLAEE21 pKa = 3.92EE22 pKa = 4.54LFTFEE27 pKa = 4.08VNYY30 pKa = 11.15NEE32 pKa = 5.59DD33 pKa = 3.44YY34 pKa = 11.62DD35 pKa = 4.56FFTVDD40 pKa = 3.98LEE42 pKa = 4.35RR43 pKa = 11.84DD44 pKa = 3.61GEE46 pKa = 4.21ILVVGEE52 pKa = 3.95KK53 pKa = 10.46LIYY56 pKa = 10.64AMPLFYY62 pKa = 10.98DD63 pKa = 3.89VMDD66 pKa = 3.66HH67 pKa = 7.03RR68 pKa = 11.84FPKK71 pKa = 10.21ISIIPYY77 pKa = 9.83DD78 pKa = 3.77EE79 pKa = 4.76SEE81 pKa = 4.13NSIDD85 pKa = 4.86VIWEE89 pKa = 4.04TLSEE93 pKa = 4.55SVFLYY98 pKa = 11.0VIDD101 pKa = 4.54NGEE104 pKa = 4.13DD105 pKa = 3.44TDD107 pKa = 4.03GG108 pKa = 3.93

Molecular weight: 12.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A168Q9X3|A0A168Q9X3_9BACL Glycosyl hydrolase family 31 OS=Paenibacillus antarcticus OX=253703 GN=PBAT_04755 PE=3 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.84PNVSKK11 pKa = 10.73RR12 pKa = 11.84AKK14 pKa = 8.72VHH16 pKa = 5.43GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.87VLAARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.48GRR39 pKa = 11.84KK40 pKa = 8.72ILSAA44 pKa = 4.02

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4663

0

4663

1491509

26

4467

319.9

35.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.871 ± 0.04

0.75 ± 0.01

5.282 ± 0.029

6.65 ± 0.043

4.146 ± 0.026

7.005 ± 0.035

2.109 ± 0.02

7.834 ± 0.038

5.779 ± 0.035

9.847 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.006 ± 0.017

4.498 ± 0.028

3.634 ± 0.019

3.881 ± 0.019

4.342 ± 0.027

6.779 ± 0.032

5.71 ± 0.033

7.144 ± 0.029

1.17 ± 0.012

3.564 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski