Amino acid dipepetide frequency for Nigrospora oryzae victorivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
19.399AlaAla: 19.399 ± 6.07
1.877AlaCys: 1.877 ± 0.387
3.755AlaAsp: 3.755 ± 0.089
5.006AlaGlu: 5.006 ± 0.119
5.006AlaPhe: 5.006 ± 0.982
11.89AlaGly: 11.89 ± 5.029
1.877AlaHis: 1.877 ± 1.339
1.877AlaIle: 1.877 ± 0.476
3.755AlaLys: 3.755 ± 0.089
13.141AlaLeu: 13.141 ± 1.606
3.129AlaMet: 3.129 ± 1.22
7.509AlaAsn: 7.509 ± 1.904
6.258AlaPro: 6.258 ± 2.738
2.503AlaGln: 2.503 ± 1.785
9.387AlaArg: 9.387 ± 1.072
8.135AlaSer: 8.135 ± 0.625
7.509AlaThr: 7.509 ± 0.178
9.387AlaVal: 9.387 ± 0.209
1.252AlaTrp: 1.252 ± 0.833
3.755AlaTyr: 3.755 ± 0.952
0.0AlaXaa: 0.0 ± 0.0
Cys
0.626CysAla: 0.626 ± 0.417
0.0CysCys: 0.0 ± 0.0
2.503CysAsp: 2.503 ± 0.804
0.626CysGlu: 0.626 ± 0.417
1.252CysPhe: 1.252 ± 0.893
0.626CysGly: 0.626 ± 0.417
0.0CysHis: 0.0 ± 0.0
0.626CysIle: 0.626 ± 0.417
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.252CysPro: 1.252 ± 0.833
0.0CysGln: 0.0 ± 0.0
0.626CysArg: 0.626 ± 0.417
0.0CysSer: 0.0 ± 0.0
1.252CysThr: 1.252 ± 0.03
1.252CysVal: 1.252 ± 0.893
0.0CysTrp: 0.0 ± 0.0
0.626CysTyr: 0.626 ± 0.417
0.0CysXaa: 0.0 ± 0.0
Asp
5.632AspAla: 5.632 ± 1.428
0.626AspCys: 0.626 ± 0.417
6.884AspAsp: 6.884 ± 0.268
2.503AspGlu: 2.503 ± 0.922
1.877AspPhe: 1.877 ± 0.476
3.755AspGly: 3.755 ± 0.774
1.877AspHis: 1.877 ± 0.387
1.252AspIle: 1.252 ± 0.833
1.877AspLys: 1.877 ± 1.25
5.006AspLeu: 5.006 ± 0.744
0.626AspMet: 0.626 ± 0.417
0.626AspAsn: 0.626 ± 0.446
3.755AspPro: 3.755 ± 0.952
1.877AspGln: 1.877 ± 0.387
2.503AspArg: 2.503 ± 0.804
4.38AspSer: 4.38 ± 0.328
4.38AspThr: 4.38 ± 0.328
3.755AspVal: 3.755 ± 0.952
1.252AspTrp: 1.252 ± 0.03
2.503AspTyr: 2.503 ± 0.804
0.0AspXaa: 0.0 ± 0.0
Glu
4.38GluAla: 4.38 ± 0.535
0.626GluCys: 0.626 ± 0.417
2.503GluAsp: 2.503 ± 0.804
1.877GluGlu: 1.877 ± 0.387
2.503GluPhe: 2.503 ± 0.804
3.755GluGly: 3.755 ± 1.815
3.129GluHis: 3.129 ± 1.22
0.626GluIle: 0.626 ± 0.417
1.252GluLys: 1.252 ± 0.833
3.129GluLeu: 3.129 ± 0.357
0.0GluMet: 0.0 ± 0.0
0.626GluAsn: 0.626 ± 0.446
1.252GluPro: 1.252 ± 0.03
0.626GluGln: 0.626 ± 0.417
5.006GluArg: 5.006 ± 1.607
2.503GluSer: 2.503 ± 0.059
3.755GluThr: 3.755 ± 1.637
3.755GluVal: 3.755 ± 1.637
0.626GluTrp: 0.626 ± 0.417
1.252GluTyr: 1.252 ± 0.03
0.0GluXaa: 0.0 ± 0.0
Phe
3.755PheAla: 3.755 ± 0.952
0.0PheCys: 0.0 ± 0.0
1.877PheAsp: 1.877 ± 0.476
4.38PheGlu: 4.38 ± 0.328
0.0PhePhe: 0.0 ± 0.0
3.755PheGly: 3.755 ± 2.678
0.0PheHis: 0.0 ± 0.0
1.877PheIle: 1.877 ± 0.476
1.252PheLys: 1.252 ± 0.03
2.503PheLeu: 2.503 ± 1.667
0.0PheMet: 0.0 ± 0.0
1.252PheAsn: 1.252 ± 0.03
1.252PhePro: 1.252 ± 0.833
0.626PheGln: 0.626 ± 0.446
1.877PheArg: 1.877 ± 1.339
1.877PheSer: 1.877 ± 1.339
0.626PheThr: 0.626 ± 0.446
0.626PheVal: 0.626 ± 0.417
0.626PheTrp: 0.626 ± 0.446
0.626PheTyr: 0.626 ± 0.446
0.0PheXaa: 0.0 ± 0.0
Gly
13.141GlyAla: 13.141 ± 5.058
0.0GlyCys: 0.0 ± 0.0
5.632GlyAsp: 5.632 ± 2.291
3.129GlyGlu: 3.129 ± 0.357
1.252GlyPhe: 1.252 ± 0.893
6.884GlyGly: 6.884 ± 3.184
1.877GlyHis: 1.877 ± 1.25
5.006GlyIle: 5.006 ± 0.119
3.129GlyLys: 3.129 ± 2.083
7.509GlyLeu: 7.509 ± 2.767
0.0GlyMet: 0.0 ± 0.0
2.503GlyAsn: 2.503 ± 0.804
3.755GlyPro: 3.755 ± 1.815
4.38GlyGln: 4.38 ± 1.398
6.884GlyArg: 6.884 ± 0.268
3.755GlySer: 3.755 ± 1.637
4.38GlyThr: 4.38 ± 1.398
5.006GlyVal: 5.006 ± 0.982
2.503GlyTrp: 2.503 ± 0.059
3.129GlyTyr: 3.129 ± 1.22
0.0GlyXaa: 0.0 ± 0.0
His
1.877HisAla: 1.877 ± 0.476
1.252HisCys: 1.252 ± 0.03
1.252HisAsp: 1.252 ± 0.03
0.626HisGlu: 0.626 ± 0.417
0.0HisPhe: 0.0 ± 0.0
2.503HisGly: 2.503 ± 0.059
1.252HisHis: 1.252 ± 0.03
0.0HisIle: 0.0 ± 0.0
0.626HisLys: 0.626 ± 0.417
3.129HisLeu: 3.129 ± 1.22
1.252HisMet: 1.252 ± 0.833
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
0.626HisGln: 0.626 ± 0.446
1.877HisArg: 1.877 ± 1.25
1.252HisSer: 1.252 ± 0.03
1.252HisThr: 1.252 ± 0.03
1.252HisVal: 1.252 ± 0.833
0.626HisTrp: 0.626 ± 0.417
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.129IleAla: 3.129 ± 0.357
0.0IleCys: 0.0 ± 0.0
1.252IleAsp: 1.252 ± 0.03
3.129IleGlu: 3.129 ± 0.357
2.503IlePhe: 2.503 ± 0.922
1.252IleGly: 1.252 ± 0.03
0.626IleHis: 0.626 ± 0.446
0.0IleIle: 0.0 ± 0.0
0.0IleLys: 0.0 ± 0.0
1.252IleLeu: 1.252 ± 0.833
0.626IleMet: 0.626 ± 0.417
2.503IleAsn: 2.503 ± 0.922
5.006IlePro: 5.006 ± 2.708
1.877IleGln: 1.877 ± 0.476
1.877IleArg: 1.877 ± 0.476
3.129IleSer: 3.129 ± 1.22
1.877IleThr: 1.877 ± 0.387
3.129IleVal: 3.129 ± 0.506
0.0IleTrp: 0.0 ± 0.0
1.877IleTyr: 1.877 ± 1.25
0.0IleXaa: 0.0 ± 0.0
Lys
2.503LysAla: 2.503 ± 1.667
0.0LysCys: 0.0 ± 0.0
0.626LysAsp: 0.626 ± 0.417
1.877LysGlu: 1.877 ± 1.25
0.626LysPhe: 0.626 ± 0.417
1.877LysGly: 1.877 ± 0.476
1.877LysHis: 1.877 ± 0.387
1.877LysIle: 1.877 ± 0.387
0.626LysLys: 0.626 ± 0.417
3.755LysLeu: 3.755 ± 1.637
0.626LysMet: 0.626 ± 0.446
0.626LysAsn: 0.626 ± 0.417
2.503LysPro: 2.503 ± 1.667
0.626LysGln: 0.626 ± 0.417
4.38LysArg: 4.38 ± 2.054
1.252LysSer: 1.252 ± 0.833
1.877LysThr: 1.877 ± 0.476
0.0LysVal: 0.0 ± 0.0
0.0LysTrp: 0.0 ± 0.0
2.503LysTyr: 2.503 ± 0.922
0.0LysXaa: 0.0 ± 0.0
Leu
13.767LeuAla: 13.767 ± 0.536
0.626LeuCys: 0.626 ± 0.417
6.884LeuAsp: 6.884 ± 1.131
5.632LeuGlu: 5.632 ± 2.024
1.252LeuPhe: 1.252 ± 0.03
6.884LeuGly: 6.884 ± 1.994
1.252LeuHis: 1.252 ± 0.833
3.755LeuIle: 3.755 ± 0.089
3.755LeuLys: 3.755 ± 0.089
10.013LeuLeu: 10.013 ± 5.803
2.503LeuMet: 2.503 ± 1.667
2.503LeuAsn: 2.503 ± 0.804
5.632LeuPro: 5.632 ± 1.428
0.0LeuGln: 0.0 ± 0.0
8.135LeuArg: 8.135 ± 1.964
5.006LeuSer: 5.006 ± 0.744
8.135LeuThr: 8.135 ± 1.964
3.129LeuVal: 3.129 ± 1.22
0.626LeuTrp: 0.626 ± 0.446
2.503LeuTyr: 2.503 ± 0.059
0.0LeuXaa: 0.0 ± 0.0
Met
3.129MetAla: 3.129 ± 0.357
0.626MetCys: 0.626 ± 0.446
0.626MetAsp: 0.626 ± 0.446
1.877MetGlu: 1.877 ± 1.25
0.0MetPhe: 0.0 ± 0.0
3.129MetGly: 3.129 ± 1.22
0.0MetHis: 0.0 ± 0.0
1.252MetIle: 1.252 ± 0.833
0.626MetLys: 0.626 ± 0.446
1.877MetLeu: 1.877 ± 1.25
0.626MetMet: 0.626 ± 0.446
0.626MetAsn: 0.626 ± 0.417
1.877MetPro: 1.877 ± 1.25
0.626MetGln: 0.626 ± 0.417
2.503MetArg: 2.503 ± 0.059
0.626MetSer: 0.626 ± 0.417
0.0MetThr: 0.0 ± 0.0
0.626MetVal: 0.626 ± 0.417
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.755AsnAla: 3.755 ± 0.952
0.0AsnCys: 0.0 ± 0.0
1.252AsnAsp: 1.252 ± 0.833
0.626AsnGlu: 0.626 ± 0.417
3.129AsnPhe: 3.129 ± 1.369
2.503AsnGly: 2.503 ± 0.059
0.0AsnHis: 0.0 ± 0.0
1.877AsnIle: 1.877 ± 0.476
0.0AsnLys: 0.0 ± 0.0
1.877AsnLeu: 1.877 ± 0.476
0.626AsnMet: 0.626 ± 0.417
0.626AsnAsn: 0.626 ± 0.446
5.632AsnPro: 5.632 ± 0.565
0.626AsnGln: 0.626 ± 0.446
2.503AsnArg: 2.503 ± 0.059
3.129AsnSer: 3.129 ± 0.506
1.252AsnThr: 1.252 ± 0.03
0.626AsnVal: 0.626 ± 0.446
0.626AsnTrp: 0.626 ± 0.417
2.503AsnTyr: 2.503 ± 0.059
0.0AsnXaa: 0.0 ± 0.0
Pro
6.258ProAla: 6.258 ± 2.738
1.877ProCys: 1.877 ± 0.476
3.129ProAsp: 3.129 ± 0.506
3.755ProGlu: 3.755 ± 0.089
0.626ProPhe: 0.626 ± 0.417
2.503ProGly: 2.503 ± 0.059
1.252ProHis: 1.252 ± 0.03
1.877ProIle: 1.877 ± 1.339
1.877ProLys: 1.877 ± 1.25
8.135ProLeu: 8.135 ± 0.238
1.877ProMet: 1.877 ± 0.476
1.252ProAsn: 1.252 ± 0.03
11.89ProPro: 11.89 ± 5.029
3.129ProGln: 3.129 ± 0.506
1.877ProArg: 1.877 ± 0.476
3.755ProSer: 3.755 ± 0.089
6.884ProThr: 6.884 ± 2.321
5.006ProVal: 5.006 ± 0.119
0.0ProTrp: 0.0 ± 0.0
2.503ProTyr: 2.503 ± 0.922
0.0ProXaa: 0.0 ± 0.0
Gln
4.38GlnAla: 4.38 ± 0.535
0.0GlnCys: 0.0 ± 0.0
0.626GlnAsp: 0.626 ± 0.446
1.252GlnGlu: 1.252 ± 0.03
0.626GlnPhe: 0.626 ± 0.446
2.503GlnGly: 2.503 ± 0.922
0.0GlnHis: 0.0 ± 0.0
1.252GlnIle: 1.252 ± 0.833
0.626GlnLys: 0.626 ± 0.446
1.252GlnLeu: 1.252 ± 0.893
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
3.129GlnPro: 3.129 ± 1.369
0.0GlnGln: 0.0 ± 0.0
0.626GlnArg: 0.626 ± 0.417
2.503GlnSer: 2.503 ± 0.059
1.877GlnThr: 1.877 ± 0.476
3.755GlnVal: 3.755 ± 0.952
1.877GlnTrp: 1.877 ± 0.387
1.252GlnTyr: 1.252 ± 0.03
0.0GlnXaa: 0.0 ± 0.0
Arg
6.884ArgAla: 6.884 ± 2.857
1.877ArgCys: 1.877 ± 1.25
3.129ArgAsp: 3.129 ± 2.083
1.877ArgGlu: 1.877 ± 0.387
0.626ArgPhe: 0.626 ± 0.446
5.006ArgGly: 5.006 ± 0.982
2.503ArgHis: 2.503 ± 0.804
2.503ArgIle: 2.503 ± 0.059
3.129ArgLys: 3.129 ± 1.22
5.006ArgLeu: 5.006 ± 0.119
1.252ArgMet: 1.252 ± 0.833
3.129ArgAsn: 3.129 ± 0.506
1.252ArgPro: 1.252 ± 0.833
3.755ArgGln: 3.755 ± 0.089
8.761ArgArg: 8.761 ± 2.381
4.38ArgSer: 4.38 ± 0.328
4.38ArgThr: 4.38 ± 1.398
8.135ArgVal: 8.135 ± 1.964
1.877ArgTrp: 1.877 ± 0.387
1.252ArgTyr: 1.252 ± 0.893
0.0ArgXaa: 0.0 ± 0.0
Ser
6.258SerAla: 6.258 ± 0.714
1.252SerCys: 1.252 ± 0.03
4.38SerAsp: 4.38 ± 1.191
1.252SerGlu: 1.252 ± 0.833
1.877SerPhe: 1.877 ± 0.387
8.135SerGly: 8.135 ± 2.351
1.252SerHis: 1.252 ± 0.833
1.877SerIle: 1.877 ± 1.339
1.877SerLys: 1.877 ± 1.25
5.006SerLeu: 5.006 ± 1.607
0.626SerMet: 0.626 ± 0.417
3.755SerAsn: 3.755 ± 0.952
3.129SerPro: 3.129 ± 1.369
1.252SerGln: 1.252 ± 0.893
4.38SerArg: 4.38 ± 2.054
6.258SerSer: 6.258 ± 0.149
3.129SerThr: 3.129 ± 1.369
8.135SerVal: 8.135 ± 0.625
1.877SerTrp: 1.877 ± 0.387
3.755SerTyr: 3.755 ± 1.637
0.0SerXaa: 0.0 ± 0.0
Thr
10.013ThrAla: 10.013 ± 4.553
0.0ThrCys: 0.0 ± 0.0
4.38ThrAsp: 4.38 ± 0.535
1.252ThrGlu: 1.252 ± 0.833
2.503ThrPhe: 2.503 ± 0.922
5.006ThrGly: 5.006 ± 0.119
0.626ThrHis: 0.626 ± 0.417
4.38ThrIle: 4.38 ± 0.328
2.503ThrLys: 2.503 ± 1.667
4.38ThrLeu: 4.38 ± 2.054
2.503ThrMet: 2.503 ± 0.804
3.129ThrAsn: 3.129 ± 2.232
1.877ThrPro: 1.877 ± 0.476
1.252ThrGln: 1.252 ± 0.833
1.877ThrArg: 1.877 ± 0.476
6.884ThrSer: 6.884 ± 1.458
6.884ThrThr: 6.884 ± 2.321
3.755ThrVal: 3.755 ± 1.815
0.626ThrTrp: 0.626 ± 0.417
1.252ThrTyr: 1.252 ± 0.03
0.0ThrXaa: 0.0 ± 0.0
Val
11.264ValAla: 11.264 ± 1.993
0.0ValCys: 0.0 ± 0.0
3.755ValAsp: 3.755 ± 0.952
1.877ValGlu: 1.877 ± 0.387
2.503ValPhe: 2.503 ± 0.059
6.258ValGly: 6.258 ± 0.714
1.252ValHis: 1.252 ± 0.03
1.877ValIle: 1.877 ± 0.476
1.877ValLys: 1.877 ± 1.25
7.509ValLeu: 7.509 ± 3.274
1.877ValMet: 1.877 ± 0.045
2.503ValAsn: 2.503 ± 1.667
5.632ValPro: 5.632 ± 0.565
1.877ValGln: 1.877 ± 0.387
3.129ValArg: 3.129 ± 0.506
6.258ValSer: 6.258 ± 0.149
3.755ValThr: 3.755 ± 1.815
3.755ValVal: 3.755 ± 0.089
0.0ValTrp: 0.0 ± 0.0
1.252ValTyr: 1.252 ± 0.03
0.0ValXaa: 0.0 ± 0.0
Trp
1.877TrpAla: 1.877 ± 0.476
0.0TrpCys: 0.0 ± 0.0
1.877TrpAsp: 1.877 ± 0.387
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
1.252TrpGly: 1.252 ± 0.833
0.0TrpHis: 0.0 ± 0.0
0.626TrpIle: 0.626 ± 0.446
0.0TrpLys: 0.0 ± 0.0
1.252TrpLeu: 1.252 ± 0.833
1.252TrpMet: 1.252 ± 0.03
0.0TrpAsn: 0.0 ± 0.0
0.626TrpPro: 0.626 ± 0.417
0.0TrpGln: 0.0 ± 0.0
0.626TrpArg: 0.626 ± 0.446
0.626TrpSer: 0.626 ± 0.417
1.877TrpThr: 1.877 ± 0.387
1.877TrpVal: 1.877 ± 0.387
0.0TrpTrp: 0.0 ± 0.0
0.626TrpTyr: 0.626 ± 0.417
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.38TyrAla: 4.38 ± 1.398
0.626TyrCys: 0.626 ± 0.417
0.626TyrAsp: 0.626 ± 0.417
0.626TyrGlu: 0.626 ± 0.446
0.626TyrPhe: 0.626 ± 0.446
4.38TyrGly: 4.38 ± 0.535
0.0TyrHis: 0.0 ± 0.0
0.626TyrIle: 0.626 ± 0.446
1.252TyrLys: 1.252 ± 0.893
6.258TyrLeu: 6.258 ± 3.303
0.626TyrMet: 0.626 ± 0.417
0.0TyrAsn: 0.0 ± 0.0
3.755TyrPro: 3.755 ± 0.089
1.877TyrGln: 1.877 ± 1.339
1.877TyrArg: 1.877 ± 0.387
3.755TyrSer: 3.755 ± 0.774
0.0TyrThr: 0.0 ± 0.0
1.877TyrVal: 1.877 ± 1.25
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1599 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski