Cercopithecine herpesvirus 9 (strain DHV) (CeHV-9) (Simian varicella virus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus; Cercopithecine alphaherpesvirus 9

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9E1Y6|Q9E1Y6_CHV9D Tripartite terminase subunit 1 OS=Cercopithecine herpesvirus 9 (strain DHV) OX=36348 GN=TRM1 PE=3 SV=1
MM1 pKa = 7.56ASSNTCEE8 pKa = 4.06EE9 pKa = 4.47QNNSTTTAALTGEE22 pKa = 4.51ACNKK26 pKa = 9.82QPLTLKK32 pKa = 10.64VEE34 pKa = 4.33PSDD37 pKa = 4.68NSTQEE42 pKa = 3.74YY43 pKa = 9.85EE44 pKa = 4.35EE45 pKa = 4.11RR46 pKa = 11.84SKK48 pKa = 11.22PIDD51 pKa = 3.61VCPLGPSQCRR61 pKa = 11.84ACAIKK66 pKa = 10.21PFRR69 pKa = 11.84LGGTSHH75 pKa = 5.92YY76 pKa = 9.97RR77 pKa = 11.84YY78 pKa = 10.29LEE80 pKa = 4.15RR81 pKa = 11.84CPSGRR86 pKa = 11.84HH87 pKa = 4.85ISLALEE93 pKa = 4.34IIFLEE98 pKa = 5.08DD99 pKa = 4.13GSCVPRR105 pKa = 11.84VFPDD109 pKa = 3.55TPEE112 pKa = 4.17EE113 pKa = 3.98DD114 pKa = 2.85WMLAYY119 pKa = 9.85IIPDD123 pKa = 3.47RR124 pKa = 11.84EE125 pKa = 4.23QPSSSEE131 pKa = 4.31SEE133 pKa = 3.71TDD135 pKa = 2.98

Molecular weight: 14.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D0TCK6|A0A2D0TCK6_CHV9D Uncharacterized protein OS=Cercopithecine herpesvirus 9 (strain DHV) OX=36348 PE=4 SV=1
MM1 pKa = 7.47TSYY4 pKa = 11.32SSNTSSSEE12 pKa = 4.1TMCVFGRR19 pKa = 11.84AFIATPRR26 pKa = 11.84EE27 pKa = 3.66HH28 pKa = 7.43RR29 pKa = 11.84EE30 pKa = 4.11FIEE33 pKa = 3.94TLAALGKK40 pKa = 10.2SNAVVSAYY48 pKa = 9.77IKK50 pKa = 10.33GYY52 pKa = 9.88RR53 pKa = 11.84DD54 pKa = 3.68RR55 pKa = 11.84EE56 pKa = 3.97QHH58 pKa = 5.09SARR61 pKa = 11.84LHH63 pKa = 5.61RR64 pKa = 11.84RR65 pKa = 11.84HH66 pKa = 6.33KK67 pKa = 10.8KK68 pKa = 9.83HH69 pKa = 5.06VTSS72 pKa = 4.11

Molecular weight: 8.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

34938

72

2653

506.3

56.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.463 ± 0.251

2.524 ± 0.126

4.914 ± 0.156

5.118 ± 0.143

4.313 ± 0.174

5.055 ± 0.232

2.648 ± 0.116

6.523 ± 0.204

4.225 ± 0.197

9.657 ± 0.222

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.207 ± 0.102

5.392 ± 0.205

5.123 ± 0.265

3.612 ± 0.123

5.484 ± 0.232

7.708 ± 0.209

7.158 ± 0.229

6.981 ± 0.149

1.033 ± 0.065

3.861 ± 0.168
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski