Amino acid dipepetide frequency for Giant panda circovirus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.944AlaAla: 5.944 ± 2.548
0.0AlaCys: 0.0 ± 0.0
2.972AlaAsp: 2.972 ± 1.598
2.972AlaGlu: 2.972 ± 1.884
1.486AlaPhe: 1.486 ± 0.942
5.944AlaGly: 5.944 ± 0.707
0.0AlaHis: 0.0 ± 0.0
1.486AlaIle: 1.486 ± 1.59
1.486AlaLys: 1.486 ± 0.942
1.486AlaLeu: 1.486 ± 1.14
1.486AlaMet: 1.486 ± 0.866
7.429AlaAsn: 7.429 ± 2.36
2.972AlaPro: 2.972 ± 1.598
2.972AlaGln: 2.972 ± 1.884
7.429AlaArg: 7.429 ± 5.999
5.944AlaSer: 5.944 ± 1.344
4.458AlaThr: 4.458 ± 1.78
4.458AlaVal: 4.458 ± 1.843
0.0AlaTrp: 0.0 ± 0.0
1.486AlaTyr: 1.486 ± 1.59
0.0AlaXaa: 0.0 ± 0.0
Cys
1.486CysAla: 1.486 ± 1.59
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
1.486CysPhe: 1.486 ± 0.942
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.486CysIle: 1.486 ± 1.14
2.972CysLys: 2.972 ± 1.884
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
4.458CysPro: 4.458 ± 1.843
5.944CysGln: 5.944 ± 1.706
1.486CysArg: 1.486 ± 1.14
2.972CysSer: 2.972 ± 0.853
1.486CysThr: 1.486 ± 1.59
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
4.458CysTyr: 4.458 ± 1.843
0.0CysXaa: 0.0 ± 0.0
Asp
5.944AspAla: 5.944 ± 1.706
1.486AspCys: 1.486 ± 0.942
1.486AspAsp: 1.486 ± 0.942
4.458AspGlu: 4.458 ± 2.826
0.0AspPhe: 0.0 ± 0.0
5.944AspGly: 5.944 ± 2.215
0.0AspHis: 0.0 ± 0.0
2.972AspIle: 2.972 ± 0.853
2.972AspLys: 2.972 ± 1.884
1.486AspLeu: 1.486 ± 1.14
0.0AspMet: 0.0 ± 0.0
1.486AspAsn: 1.486 ± 1.59
1.486AspPro: 1.486 ± 0.942
0.0AspGln: 0.0 ± 0.0
1.486AspArg: 1.486 ± 0.942
5.944AspSer: 5.944 ± 3.226
4.458AspThr: 4.458 ± 2.276
2.972AspVal: 2.972 ± 0.853
0.0AspTrp: 0.0 ± 0.0
2.972AspTyr: 2.972 ± 3.181
0.0AspXaa: 0.0 ± 0.0
Glu
2.972GluAla: 2.972 ± 0.853
1.486GluCys: 1.486 ± 0.942
0.0GluAsp: 0.0 ± 0.0
1.486GluGlu: 1.486 ± 1.14
2.972GluPhe: 2.972 ± 1.884
4.458GluGly: 4.458 ± 1.389
1.486GluHis: 1.486 ± 0.942
2.972GluIle: 2.972 ± 0.853
2.972GluLys: 2.972 ± 1.884
1.486GluLeu: 1.486 ± 1.14
2.972GluMet: 2.972 ± 0.853
1.486GluAsn: 1.486 ± 0.942
0.0GluPro: 0.0 ± 0.0
1.486GluGln: 1.486 ± 0.942
2.972GluArg: 2.972 ± 1.884
5.944GluSer: 5.944 ± 2.215
2.972GluThr: 2.972 ± 0.853
1.486GluVal: 1.486 ± 0.942
0.0GluTrp: 0.0 ± 0.0
1.486GluTyr: 1.486 ± 0.942
0.0GluXaa: 0.0 ± 0.0
Phe
4.458PheAla: 4.458 ± 2.826
4.458PheCys: 4.458 ± 2.276
7.429PheAsp: 7.429 ± 3.108
4.458PheGlu: 4.458 ± 1.78
7.429PhePhe: 7.429 ± 2.032
0.0PheGly: 0.0 ± 0.0
1.486PheHis: 1.486 ± 1.59
1.486PheIle: 1.486 ± 1.14
2.972PheLys: 2.972 ± 0.853
2.972PheLeu: 2.972 ± 1.44
0.0PheMet: 0.0 ± 0.0
4.458PheAsn: 4.458 ± 1.389
2.972PhePro: 2.972 ± 1.598
2.972PheGln: 2.972 ± 0.853
0.0PheArg: 0.0 ± 0.0
2.972PheSer: 2.972 ± 1.598
5.944PheThr: 5.944 ± 1.706
4.458PheVal: 4.458 ± 0.8
0.0PheTrp: 0.0 ± 0.0
1.486PheTyr: 1.486 ± 0.942
0.0PheXaa: 0.0 ± 0.0
Gly
2.972GlyAla: 2.972 ± 2.281
1.486GlyCys: 1.486 ± 0.942
1.486GlyAsp: 1.486 ± 1.14
5.944GlyGlu: 5.944 ± 2.215
2.972GlyPhe: 2.972 ± 0.853
1.486GlyGly: 1.486 ± 0.942
0.0GlyHis: 0.0 ± 0.0
1.486GlyIle: 1.486 ± 1.14
5.944GlyLys: 5.944 ± 2.548
2.972GlyLeu: 2.972 ± 0.853
0.0GlyMet: 0.0 ± 0.0
2.972GlyAsn: 2.972 ± 0.853
0.0GlyPro: 0.0 ± 0.0
5.944GlyGln: 5.944 ± 1.706
4.458GlyArg: 4.458 ± 2.826
7.429GlySer: 7.429 ± 0.454
4.458GlyThr: 4.458 ± 1.389
4.458GlyVal: 4.458 ± 0.8
0.0GlyTrp: 0.0 ± 0.0
5.944GlyTyr: 5.944 ± 0.707
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
1.486HisCys: 1.486 ± 1.59
1.486HisAsp: 1.486 ± 0.942
0.0HisGlu: 0.0 ± 0.0
1.486HisPhe: 1.486 ± 0.942
1.486HisGly: 1.486 ± 0.942
0.0HisHis: 0.0 ± 0.0
1.486HisIle: 1.486 ± 0.942
2.972HisLys: 2.972 ± 2.281
4.458HisLeu: 4.458 ± 0.8
0.0HisMet: 0.0 ± 0.0
1.486HisAsn: 1.486 ± 0.942
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
1.486HisThr: 1.486 ± 0.942
0.0HisVal: 0.0 ± 0.0
1.486HisTrp: 1.486 ± 0.942
1.486HisTyr: 1.486 ± 1.14
0.0HisXaa: 0.0 ± 0.0
Ile
1.486IleAla: 1.486 ± 0.942
1.486IleCys: 1.486 ± 0.942
0.0IleAsp: 0.0 ± 0.0
1.486IleGlu: 1.486 ± 0.942
2.972IlePhe: 2.972 ± 1.598
2.972IleGly: 2.972 ± 0.853
2.972IleHis: 2.972 ± 1.884
1.486IleIle: 1.486 ± 0.942
0.0IleLys: 0.0 ± 0.0
5.944IleLeu: 5.944 ± 0.707
1.486IleMet: 1.486 ± 1.14
1.486IleAsn: 1.486 ± 1.14
1.486IlePro: 1.486 ± 1.14
1.486IleGln: 1.486 ± 1.59
1.486IleArg: 1.486 ± 0.942
4.458IleSer: 4.458 ± 0.8
4.458IleThr: 4.458 ± 2.276
1.486IleVal: 1.486 ± 1.14
0.0IleTrp: 0.0 ± 0.0
0.0IleTyr: 0.0 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.486LysAla: 1.486 ± 0.942
1.486LysCys: 1.486 ± 0.942
1.486LysAsp: 1.486 ± 0.942
0.0LysGlu: 0.0 ± 0.0
5.944LysPhe: 5.944 ± 2.866
2.972LysGly: 2.972 ± 0.853
1.486LysHis: 1.486 ± 0.942
0.0LysIle: 0.0 ± 0.0
2.972LysLys: 2.972 ± 0.853
2.972LysLeu: 2.972 ± 0.853
2.972LysMet: 2.972 ± 0.853
2.972LysAsn: 2.972 ± 1.598
5.944LysPro: 5.944 ± 3.196
1.486LysGln: 1.486 ± 1.14
8.915LysArg: 8.915 ± 5.769
4.458LysSer: 4.458 ± 1.843
5.944LysThr: 5.944 ± 0.707
1.486LysVal: 1.486 ± 1.14
1.486LysTrp: 1.486 ± 0.942
4.458LysTyr: 4.458 ± 1.389
0.0LysXaa: 0.0 ± 0.0
Leu
0.0LeuAla: 0.0 ± 0.0
2.972LeuCys: 2.972 ± 2.281
4.458LeuAsp: 4.458 ± 2.276
4.458LeuGlu: 4.458 ± 1.389
4.458LeuPhe: 4.458 ± 1.389
1.486LeuGly: 1.486 ± 1.14
1.486LeuHis: 1.486 ± 1.14
2.972LeuIle: 2.972 ± 1.44
0.0LeuLys: 0.0 ± 0.0
5.944LeuLeu: 5.944 ± 1.344
1.486LeuMet: 1.486 ± 0.942
1.486LeuAsn: 1.486 ± 0.942
1.486LeuPro: 1.486 ± 1.59
0.0LeuGln: 0.0 ± 0.0
2.972LeuArg: 2.972 ± 1.598
5.944LeuSer: 5.944 ± 0.707
7.429LeuThr: 7.429 ± 2.548
4.458LeuVal: 4.458 ± 1.843
0.0LeuTrp: 0.0 ± 0.0
0.0LeuTyr: 0.0 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
1.486MetCys: 1.486 ± 1.59
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
2.972MetPhe: 2.972 ± 0.853
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
5.944MetLeu: 5.944 ± 1.706
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.486MetPro: 1.486 ± 0.942
2.972MetGln: 2.972 ± 0.853
1.486MetArg: 1.486 ± 0.942
0.0MetSer: 0.0 ± 0.0
4.458MetThr: 4.458 ± 2.977
1.486MetVal: 1.486 ± 1.59
1.486MetTrp: 1.486 ± 0.942
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
8.915AsnAla: 8.915 ± 2.827
1.486AsnCys: 1.486 ± 0.942
4.458AsnAsp: 4.458 ± 1.389
1.486AsnGlu: 1.486 ± 0.942
1.486AsnPhe: 1.486 ± 1.59
5.944AsnGly: 5.944 ± 2.548
0.0AsnHis: 0.0 ± 0.0
4.458AsnIle: 4.458 ± 2.977
4.458AsnLys: 4.458 ± 1.389
1.486AsnLeu: 1.486 ± 0.942
2.972AsnMet: 2.972 ± 3.181
1.486AsnAsn: 1.486 ± 1.14
2.972AsnPro: 2.972 ± 0.853
1.486AsnGln: 1.486 ± 0.942
0.0AsnArg: 0.0 ± 0.0
5.944AsnSer: 5.944 ± 1.706
4.458AsnThr: 4.458 ± 1.78
1.486AsnVal: 1.486 ± 1.14
0.0AsnTrp: 0.0 ± 0.0
2.972AsnTyr: 2.972 ± 2.281
0.0AsnXaa: 0.0 ± 0.0
Pro
5.944ProAla: 5.944 ± 1.344
1.486ProCys: 1.486 ± 1.14
0.0ProAsp: 0.0 ± 0.0
0.0ProGlu: 0.0 ± 0.0
1.486ProPhe: 1.486 ± 1.14
2.972ProGly: 2.972 ± 0.853
0.0ProHis: 0.0 ± 0.0
0.0ProIle: 0.0 ± 0.0
2.972ProLys: 2.972 ± 1.598
0.0ProLeu: 0.0 ± 0.0
2.972ProMet: 2.972 ± 1.275
4.458ProAsn: 4.458 ± 2.977
2.972ProPro: 2.972 ± 2.281
2.972ProGln: 2.972 ± 0.853
7.429ProArg: 7.429 ± 4.273
1.486ProSer: 1.486 ± 1.59
2.972ProThr: 2.972 ± 2.281
1.486ProVal: 1.486 ± 0.942
0.0ProTrp: 0.0 ± 0.0
2.972ProTyr: 2.972 ± 1.598
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
1.486GlnCys: 1.486 ± 0.942
2.972GlnAsp: 2.972 ± 1.598
4.458GlnGlu: 4.458 ± 1.78
2.972GlnPhe: 2.972 ± 1.884
2.972GlnGly: 2.972 ± 1.44
0.0GlnHis: 0.0 ± 0.0
4.458GlnIle: 4.458 ± 1.389
1.486GlnLys: 1.486 ± 1.14
1.486GlnLeu: 1.486 ± 1.14
1.486GlnMet: 1.486 ± 0.942
1.486GlnAsn: 1.486 ± 1.14
1.486GlnPro: 1.486 ± 1.59
0.0GlnGln: 0.0 ± 0.0
1.486GlnArg: 1.486 ± 1.14
5.944GlnSer: 5.944 ± 2.866
2.972GlnThr: 2.972 ± 2.281
1.486GlnVal: 1.486 ± 1.14
2.972GlnTrp: 2.972 ± 1.598
4.458GlnTyr: 4.458 ± 2.826
0.0GlnXaa: 0.0 ± 0.0
Arg
5.944ArgAla: 5.944 ± 4.43
1.486ArgCys: 1.486 ± 1.59
1.486ArgAsp: 1.486 ± 0.942
0.0ArgGlu: 0.0 ± 0.0
2.972ArgPhe: 2.972 ± 1.884
2.972ArgGly: 2.972 ± 0.853
1.486ArgHis: 1.486 ± 0.942
0.0ArgIle: 0.0 ± 0.0
8.915ArgLys: 8.915 ± 5.543
4.458ArgLeu: 4.458 ± 1.843
0.0ArgMet: 0.0 ± 0.0
4.458ArgAsn: 4.458 ± 1.843
1.486ArgPro: 1.486 ± 1.59
0.0ArgGln: 0.0 ± 0.0
16.345ArgArg: 16.345 ± 8.543
5.944ArgSer: 5.944 ± 2.881
7.429ArgThr: 7.429 ± 1.461
4.458ArgVal: 4.458 ± 2.977
1.486ArgTrp: 1.486 ± 0.942
1.486ArgTyr: 1.486 ± 1.14
0.0ArgXaa: 0.0 ± 0.0
Ser
5.944SerAla: 5.944 ± 2.368
1.486SerCys: 1.486 ± 0.942
5.944SerAsp: 5.944 ± 3.226
4.458SerGlu: 4.458 ± 2.826
4.458SerPhe: 4.458 ± 2.977
8.915SerGly: 8.915 ± 3.455
4.458SerHis: 4.458 ± 1.78
4.458SerIle: 4.458 ± 2.826
4.458SerLys: 4.458 ± 0.8
5.944SerLeu: 5.944 ± 2.368
0.0SerMet: 0.0 ± 0.0
7.429SerAsn: 7.429 ± 1.461
2.972SerPro: 2.972 ± 2.281
1.486SerGln: 1.486 ± 1.14
2.972SerArg: 2.972 ± 1.598
2.972SerSer: 2.972 ± 0.853
1.486SerThr: 1.486 ± 0.942
4.458SerVal: 4.458 ± 1.389
1.486SerTrp: 1.486 ± 0.942
4.458SerTyr: 4.458 ± 1.78
0.0SerXaa: 0.0 ± 0.0
Thr
4.458ThrAla: 4.458 ± 0.8
0.0ThrCys: 0.0 ± 0.0
4.458ThrAsp: 4.458 ± 2.826
1.486ThrGlu: 1.486 ± 0.942
5.944ThrPhe: 5.944 ± 1.344
4.458ThrGly: 4.458 ± 3.421
1.486ThrHis: 1.486 ± 1.14
4.458ThrIle: 4.458 ± 1.78
5.944ThrLys: 5.944 ± 4.561
1.486ThrLeu: 1.486 ± 1.14
1.486ThrMet: 1.486 ± 0.942
7.429ThrAsn: 7.429 ± 0.454
7.429ThrPro: 7.429 ± 2.345
5.944ThrGln: 5.944 ± 3.226
4.458ThrArg: 4.458 ± 2.884
5.944ThrSer: 5.944 ± 1.706
2.972ThrThr: 2.972 ± 2.281
5.944ThrVal: 5.944 ± 2.866
1.486ThrTrp: 1.486 ± 0.942
2.972ThrTyr: 2.972 ± 1.884
0.0ThrXaa: 0.0 ± 0.0
Val
4.458ValAla: 4.458 ± 2.884
0.0ValCys: 0.0 ± 0.0
0.0ValAsp: 0.0 ± 0.0
2.972ValGlu: 2.972 ± 1.884
2.972ValPhe: 2.972 ± 0.853
1.486ValGly: 1.486 ± 0.942
1.486ValHis: 1.486 ± 0.942
2.972ValIle: 2.972 ± 1.598
4.458ValLys: 4.458 ± 0.8
1.486ValLeu: 1.486 ± 1.14
1.486ValMet: 1.486 ± 1.14
2.972ValAsn: 2.972 ± 0.853
1.486ValPro: 1.486 ± 1.14
4.458ValGln: 4.458 ± 2.276
2.972ValArg: 2.972 ± 0.853
5.944ValSer: 5.944 ± 1.344
5.944ValThr: 5.944 ± 0.707
1.486ValVal: 1.486 ± 1.59
0.0ValTrp: 0.0 ± 0.0
1.486ValTyr: 1.486 ± 0.942
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
1.486TrpCys: 1.486 ± 0.942
2.972TrpAsp: 2.972 ± 1.884
1.486TrpGlu: 1.486 ± 0.942
1.486TrpPhe: 1.486 ± 0.942
1.486TrpGly: 1.486 ± 0.942
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.486TrpLys: 1.486 ± 1.59
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
1.486TrpGln: 1.486 ± 0.942
1.486TrpArg: 1.486 ± 0.942
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
2.972TrpTrp: 2.972 ± 1.884
1.486TrpTyr: 1.486 ± 1.14
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.486TyrAla: 1.486 ± 0.942
1.486TyrCys: 1.486 ± 0.942
4.458TyrAsp: 4.458 ± 0.8
1.486TyrGlu: 1.486 ± 1.14
4.458TyrPhe: 4.458 ± 2.276
4.458TyrGly: 4.458 ± 2.826
2.972TyrHis: 2.972 ± 1.44
0.0TyrIle: 0.0 ± 0.0
1.486TyrLys: 1.486 ± 0.942
1.486TyrLeu: 1.486 ± 0.942
1.486TyrMet: 1.486 ± 1.59
2.972TyrAsn: 2.972 ± 0.853
1.486TyrPro: 1.486 ± 0.942
2.972TyrGln: 2.972 ± 1.598
2.972TyrArg: 2.972 ± 1.44
0.0TyrSer: 0.0 ± 0.0
4.458TyrThr: 4.458 ± 3.421
2.972TyrVal: 2.972 ± 0.853
2.972TyrTrp: 2.972 ± 1.884
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (674 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski