Hydrogenimonas sp.

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Hydrogenimonaceae; Hydrogenimonas; unclassified Hydrogenimonas

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2173 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G9HAA2|A0A3G9HAA2_9PROT Cell division trigger factor OS=Hydrogenimonas sp. OX=2231112 GN=NNO_0091 PE=4 SV=1
MM1 pKa = 7.73TYY3 pKa = 10.92FLMALIIIFLAAIILIAKK21 pKa = 9.07YY22 pKa = 10.52ADD24 pKa = 3.48SEE26 pKa = 4.3DD27 pKa = 3.97MYY29 pKa = 11.65GEE31 pKa = 4.61DD32 pKa = 4.13SGSDD36 pKa = 3.2RR37 pKa = 11.84SDD39 pKa = 3.46DD40 pKa = 3.49

Molecular weight: 4.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G9H8I5|A0A3G9H8I5_9PROT Dipeptide epimerase OS=Hydrogenimonas sp. OX=2231112 GN=NNO_0100 PE=3 SV=1
MM1 pKa = 7.46YY2 pKa = 10.5DD3 pKa = 4.67DD4 pKa = 4.23DD5 pKa = 5.12TIMAIYY11 pKa = 9.78DD12 pKa = 3.25VHH14 pKa = 8.1RR15 pKa = 11.84GGISTTMRR23 pKa = 11.84VKK25 pKa = 9.38TVKK28 pKa = 10.53AGTQHH33 pKa = 6.7KK34 pKa = 10.07RR35 pKa = 11.84GTKK38 pKa = 8.92EE39 pKa = 3.59SLKK42 pKa = 10.38RR43 pKa = 11.84SVPGEE48 pKa = 3.75RR49 pKa = 11.84RR50 pKa = 11.84VKK52 pKa = 10.19VCRR55 pKa = 11.84THH57 pKa = 7.83IDD59 pKa = 2.51IRR61 pKa = 11.84QGMRR65 pKa = 11.84LRR67 pKa = 11.84YY68 pKa = 9.22KK69 pKa = 10.58LPRR72 pKa = 11.84VCGRR76 pKa = 11.84MYY78 pKa = 10.97KK79 pKa = 10.83VMGLSVNRR87 pKa = 11.84ASYY90 pKa = 10.65SGATQRR96 pKa = 11.84YY97 pKa = 8.33RR98 pKa = 11.84EE99 pKa = 4.14TT100 pKa = 3.48

Molecular weight: 11.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2171

2

2173

652339

37

2070

300.2

33.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.888 ± 0.052

0.919 ± 0.022

5.48 ± 0.036

8.089 ± 0.067

4.643 ± 0.038

6.934 ± 0.046

1.915 ± 0.023

7.172 ± 0.052

6.901 ± 0.055

9.875 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.726 ± 0.023

3.479 ± 0.036

3.815 ± 0.033

2.382 ± 0.025

5.738 ± 0.051

6.159 ± 0.043

4.563 ± 0.037

6.695 ± 0.044

0.921 ± 0.02

3.705 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski