Ktedonosporobacter rubrisoli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonosporobacteraceae; Ktedonosporobacter

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9315 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V0Z0F6|A0A4V0Z0F6_9CHLR NUDIX domain-containing protein OS=Ktedonosporobacter rubrisoli OX=2509675 GN=EPA93_46660 PE=4 SV=1
MM1 pKa = 7.31NLEE4 pKa = 3.94QIKK7 pKa = 10.23YY8 pKa = 7.25QTCPWDD14 pKa = 3.39QEE16 pKa = 4.32EE17 pKa = 4.97GVLLTDD23 pKa = 4.32INEE26 pKa = 4.72DD27 pKa = 4.85LPDD30 pKa = 3.64TDD32 pKa = 5.86ADD34 pKa = 4.37GEE36 pKa = 4.24LQYY39 pKa = 11.49YY40 pKa = 8.9CLSGRR45 pKa = 11.84HH46 pKa = 4.79VFSYY50 pKa = 11.29DD51 pKa = 3.24EE52 pKa = 4.61DD53 pKa = 4.25SEE55 pKa = 4.43NEE57 pKa = 3.65RR58 pKa = 11.84RR59 pKa = 11.84KK60 pKa = 10.47

Molecular weight: 7.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P6K5J2|A0A4P6K5J2_9CHLR Methyltransferase domain-containing protein OS=Ktedonosporobacter rubrisoli OX=2509675 GN=EPA93_47640 PE=4 SV=1
MM1 pKa = 7.88PGPTGPNPGMMAAQRR16 pKa = 11.84AAQQAAQQAAQRR28 pKa = 11.84ASMNAQRR35 pKa = 11.84AAQQAAQRR43 pKa = 11.84ASMNAQQAAQRR54 pKa = 11.84ASVNAQQAARR64 pKa = 11.84RR65 pKa = 11.84ASMNAQASLRR75 pKa = 11.84SAQQTTFRR83 pKa = 11.84MPLSTRR89 pKa = 11.84QATNSRR95 pKa = 11.84SNQTQHH101 pKa = 6.63ASSNSGFAFGALIAWIVIIGLIVLILWFFFF131 pKa = 4.14

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9315

0

9315

3002708

12

3235

322.4

35.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.043 ± 0.029

1.037 ± 0.008

4.4 ± 0.017

6.15 ± 0.03

3.68 ± 0.015

6.992 ± 0.027

2.546 ± 0.012

5.813 ± 0.023

3.339 ± 0.018

11.85 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.01

2.935 ± 0.016

5.055 ± 0.02

5.156 ± 0.024

6.269 ± 0.023

6.116 ± 0.019

5.421 ± 0.017

6.409 ± 0.023

1.522 ± 0.01

3.034 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski